The aquatic vegetation patch plays a significant role on sediment net deposition in the vegetated channels. Particularly, the flow is decelerated at the leading edge of a patch that tends to induce vertical updraft, that is, a diverging flow region, in which vegetation greatly affects the pattern of sediment net deposition. This study focuses on the simulation of the sediment net deposition in the whole vegetation patch region through an innovative random displacement model, a Lagrange method, with a probability-based boundary condition instead of the reflection or sorption boundary at the channel bottom. The probability model of deposition and resuspension is proposed according to the flow field characteristics in the different regions of the vegetation patch. The variation of the sediment deposition and resuspension with the turbulent kinetic energy is analyzed to illustrate the effect of the turbulence induced by vegetation, represented by the dimensionless turbulent kinetic energy (ψ), on the sediment deposition and resuspension. The sediment deposition predicted by the proposed model agrees well with the experimental measurements. Results show that the effect of vegetation on the sediment deposition and resuspension motions begins to prevail when the vegetation-induced ψ is larger than its threshold, ψ *. Although the experimental data are limited, the threshold of ψ is predicted to be within 6.8 to 10 according to the simulation results. As the turbulent kinetic energy increases, the deposition probability decreases continuously when ψ>ψ *.