Weilin Meng

and 3 more

IntroductionReal world Time on Treatment (rwToT), also known as real world time to treatment discontinuation (rwTTD), is defined as the length of time observed in real world data (as distinct from controlled clinical trials) from initiation of a medication to discontinuation of that medication1,2. The ending of the treatment can be caused by adverse events, deaths, switches of treatment and loss of follow up. Because time to treatment discontinuation can be readily obtained from electronic medical records, this effectiveness endpoint is convenient to evaluate the efficacy of a drug that is already approved for public use3. It is often used as a surrogate effectiveness endpoint, showing high correlation to progression-free survival and moderate-to-high correlation to overall survival4,5. As rwTTD is an important metric for drug effectiveness, it is routinely reported during the post-clinical trial phase2,4,6–9.Calculation of rwTTD in patient population is often equivalent to constructing a (Kaplan-Meier) KM curve, with each point representing the proportion of patients that are still on treatment at a specific time point 1. Either the entire curve, or mean rwTTD, restricted mean10, or the time point at which a specific portion of the patients (e.g. , 50%) dropping treatment is of interest. Currently, there is no existing machine learning scheme established to predict such a curve, or the midpoint, as the vast majority of the machine learning models have been focused on predicting individuals’ behavior rather than population-level behavior. Such a machine learning scheme, if established, has many meaningful clinical applications. For instance, given observed clinical parameters and outcomes in clinical trials, how do we derive expected time-to-treatment in the real-world? Given the rwTTD for a drug on one patient population, how can we predict the rwTTD when applying this drug to another population (e.g. , for a different disease)?This study establishes a machine learning framework to infer population-wise rwTTD. We showed that population-wise curve prediction differs substantially from aggregating all individuals’ results. Our framework models the population-wise curve and is generic to diverse base-learners for predicting rwTTD. We demonstrated the effectiveness of this framework based on both simulated data and real world Electronic medical records (EMR) data for pembrolizumab-treated cancer populations7,11,12. The study opens a new direction of modeling population-level rwTTD, which has great values for directing post-clinical stage drug administrations. This machine learning scheme will also have meaningful implications to population-based predictions for other problems, as machine learning algorithms have so far been focused on predictions for individual samples.