REFERENCES
Alcaide, M., Scordato, E. S. C., Price, T. D., & Irwin, D. E. (2014). Genomic divergence in a ring species complex. Nature ,511 (7507), 83–85. https://doi.org/10.1038/nature13285
Baiz, M. D., Wood, A. W., Brelsford, A., Lovette, I. J., & Toews, D. P. L. (2021). Pigmentation Genes Show Evidence of Repeated Divergence and Multiple Bouts of Introgression in Setophaga Warblers.Current Biology , 31 (3), 643–649. https://doi.org/10.1016/j.cub.2020.10.094
Bangs, O. (1918). A new race of the black-throated green wood warbler.Proceedings of the New England Zoological Club , 6 , 93–94.
Bermingham, E., Rohwer, S., Freeman, S., & Wood, C. (1992). Vicariance biogeography in the Pleistocene and speciation in North American wood warblers: a test of Mengel’s model. Proceedings of the National Academy of Sciences , 89 (14), 6624–6628.
Broad Institute. (2021). Picard: A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF. Retrieved from http://broadinstitute.github.io/picard/
Davis, K. N., Henderson, B., & Daniels, S. (1997). Inventory of Atlantic white cedar remnant stands in North Carolina. U.S. Air Force BPA No. F31610-95-AV026 .
Delmore, K. E., Hübner, S., Kane, N. C., Schuster, R., Andrew, R. L., Câmara, F., Guigó, R., & Irwin, D.E. (2015). Genomic analysis of a migratory divide reveals candidate genes for migration and implicates selective sweeps in generating islands of differentiation.Molecular Ecology , 24 (8), 1873–1888. https://doi.org/10.1111/mec.13150
Ellegren, H. (2011). Sex-chromosome evolution: recent progress and the influence of male and female heterogamety. Nature Reviews Genetics , 12 (3), 157–166. https://doi.org/10.1038/nrg2948
Greenwood, P. J., & Harvey, P. H. (1982). The natal and breeding dispersal of birds. Annual Review of Ecology and Systematics ,13 (1), 1–21. https://doi.org/10.1146/annurev.es.13.110182.000245
Haggerty, T. M. (2009). Alabama Breeding Bird Atlas 2000-2006 . Alabama Ornithological Society. Retrieved from https://conservationgis.alabama.gov/ALBBA/BBA
Hendry, A. P., Huber, S. K., De Leon, L. F., Herrel, A., & Podos, J. (2009). Disruptive selection in a bimodal population of Darwin’s finches. Proceedings of the Royal Society B: Biological Sciences ,276 (1657), 753–759. https://doi.org/10.1098/rspb.2008.1321
Hendry, A. P., Taylor, E. B., & McPhail, J. D. (2002). Adaptive divergence and the balance between selection and gene flow: lake and stream stickleback in the Misty system. Evolution , 56 (6), 1199–1216. https://doi.org/10.1111/j.0014-3820.2002.tb01432.x
Jones, J., Gibb, C. E., Millard, S. C., Barg, J. J., Girvan, K., Veit, M. L., … Robertson, R. J. (2003). Multiple Selection Pressures Generate Adherence to Bergmann’s Rule in a Neotropical Migratory Songbird. Journal of Biogeography , 32 (10), 1827–1833. https://doi.org/10.1111/j.1365-2699.2005.01320.x
Kent, C. M., Huh, K. M., Hunter, S. C., Judson, K., Powell, L. L., & Sherry, T. W. (2021). High resource overlap and small dietary differences are widespread in food‐limited warbler (Parulidae) communities. Ibis . https://doi.org/10.1111/ibi.13006
Korneliussen, T. S., Albrechtsen, A., & Nielsen, R. (2014). ANGSD: analysis of next generation sequencing data. BMC Bioinformatics ,15 (1), 1–13. https://doi.org/10.1186/s12859-014-0356-4
Langmead, B., & Salzberg, S. L. (2012). Fast gapped-read alignment with Bowtie 2. Nature Methods , 9 (4), 357–359. https://doi.org/10.1038/nmeth.1923
Lefort, V., Desper, R., & Gascuel, O. (2015). FastME 2.0: a comprehensive, accurate, and fast distance-based phylogeny inference program. Molecular Biology and Evolution , 32 (10), 2798–2800. https://doi.org/10.1093/molbev/msv150
Liu, H., Hu, J., Guo, Z., Fan, W., Xu, Y., Liang, S., Liu, D., Zhang, Y., Xie, M., Tang, J., Huang, W., Zhang, Q., Xi, Y., Li, Y., Wang, L., Ma, S., Jiang, Y., Feng, Y., Wu, Y., Cao, J., Zhou, Z. & Hou, S. (2021). A single nucleotide polymorphism variant located in the cis-regulatory region of the ABCG2 gene is associated with mallard egg colour. Molecular Ecology , 30: 1477-1491. https://doi.org/10.1111/mec.15785
Lowry, D. B., Rockwood, R. C., & Willis, J. H. (2008). Ecological reproductive isolation of coast and inland races of Mimulus guttatus . Evolution: International Journal of Organic Evolution ,62 (9), 2196–2214. https://doi.org/10.1111/j.1558-5646.2008.00457.x
Ma, S., Liu, H., Sun, W., Mustafa, A., Xi, Y., Pu, F., Li, Y., Han, C., Bai, L., & Hua, H. (2020). Molecular evolution of the ATP-binding cassette subfamily G member 2 gene subfamily and its paralogs in birds.BMC Evolutionary Biology , 20 (85). https://doi.org/10.1186/s12862-020-01654-z
MacArthur, R. H. (1958). Population Ecology of Some Warblers of Northeastern Coniferous Forests. Ecology , 39 (4), 599–619. https://doi.org/10.2307/1931600
Malgapo M.I.P., Safadi J.M., & Linder, M.E. (2021). Metallo-β-lactamase domain-containing protein 2 is S-palmitoylated and exhibits acyl-CoA hydrolase activity. Journal of Biological Chemistry ,296 :100106. https://doi.org/10.1074/jbc.RA120.015701
Mayr, E. (1982). Of What Use Are Subspecies? The Auk ,99 (3), 593–595. Retrieved from https://www.jstor.org/stable/4085949
Meisner, J., & Albrechtsen, A. (2018). Inferring population structure and admixture proportions in low-depth NGS data. Genetics ,210 (2), 719–731. https://doi.org/10.1534/genetics.118.301336
Morse, D. H., & Poole, A. F. (2020). Black-throated Green Warbler (Setophaga virens), version 2.0 (A. F. Poole, Ed.). Retrieved August 18, 2021, from Birds of North America website: https://doi.org/10.2173/bna.55
Mumford, R. E., Keller, C. E., & Zimmerman, W. (1984). The birds of Indiana . Bloomington, IN: Indiana University Press.
North Carolina Wildlife Resources Commission. (2015). North Carolina Wildlife Action Plan . Raleigh, NC.
Oyler-McCance, S. J., Cornman, R. S., Jones, K. L., & Fike, J. A. (2015). Z chromosome divergence, polymorphism and relative effective population size in a genus of lekking birds. Heredity ,115 (5), 452–459. https://doi.org/10.1038/hdy.2015.46
Price, T., Lovette, I. J., Bermingham, E., Gibbs, H. L., & Richman, A. D. (2000). The imprint of history on communities of North American and Asian warblers. American Naturalist , 156 (4), 354–367. https://doi.org/10.1086/303397
R Core Team. (2021). R A language and environment for statistical computing . Vienna, Austria: R Foundation for Statistical Computing. Retrieved from https://www.r-project.org/
Richardson, C. J. (1983). Pocosins: Vanishing Wastelands or Valuable Wetlands? BioScience , 33 (10), 626–633. https://doi.org/10.2307/1309491
Rodewald, P. G. (1997). Two new Breeding Species of Wood-Warblers (Parulinae) in Arkansas. The Southwestern Naturalist ,42 (1), 106–107.
Ruegg, K., Anderson, E. C., Boone, J., Pouls, J., & Smith, T. B. (2014). A role for migration-linked genes and genomic islands in divergence of a songbird. Molecular Ecology , 23 (19), 4757–4769. https://doi.org/10.1111/mec.12842
Schubert, M., Lindgreen, S., & Orlando, L. (2016). AdapterRemoval v2: rapid adapter trimming, identification, and read merging. BMC Research Notes , 9 (1), 1–7. https://doi.org/10.1186/s13104-016-1900-2
Seutin, G., White, B. N., & Boag, P. T. (1991). Preservation of avian blood and tissue samples for DNA analyses. Canadian Journal of Zoology , 69 (1), 82–90. https://doi.org/10.1139/z91-013
South Carolina Department of Natural Resources. (2014). South Carolina’s State Wildlife Action Plan (SWAP) 2015 . Columbia, SC.
Sprunt, Jr., A. (1953). Wayne’s Black-throated Green Warbler. In A. C. Bent (Ed.), Bulletin 203 of the United States National Museum(pp. 308–316). Washington, D.C.: U.S. Government Printing Office.
Stamatakis, A. (2014). RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics ,30 (9), 1312–1313. https://doi.org/10.1093/bioinformatics/btu033
Toews, D. P. L., Brelsford, A., Grossen, C., Milá, B., & Irwin, D. E. (2016). Genomic variation across the Yellow-rumped Warbler species complex. The Auk , 133 (4), 698–717. 10.1642/auk-16-61.1
Toews, D. P. L., Campagna, L., Taylor, S. A., Balakrishnan, C. N., Baldassarre, D. T., Deane-Coe, P. E., … Winger, B. M. (2016). Genomic approaches to understanding population divergence and speciation in birds. The Auk , 133 (1), 13–30. 10.1642/auk-15-51.1
Toews, D. P. L., Taylor, S. A., Vallender, R., Brelsford, A., Butcher, B. G., Messer, P. W., & Lovette, I. J. (2016). Plumage Genes and Little Else Distinguish the Genomes of Hybridizing Warblers. Current Biology , 26 (17), 2313–2318. https://doi.org/10.1016/j.cub.2016.06.034
Vieira, F. G., Lassalle, F., Korneliussen, T. S., & Fumagalli, M. (2016). Improving the estimation of genetic distances from Next-Generation Sequencing data. Biological Journal of the Linnean Society , 117 (1), 139–149. https://doi.org/10.1111/bij.12511
Virginia Department of Game and Inland Fisheries. (2015).Virginia’s 2015 Wildlife Action Plan . Henrico, VA.
Watts, B. D., Paxton, B. J., & Smith, F. M. (2011). Status and Habitat Use of the Wayne’s Black-throated Green Warbler in the Northern Portion of the South Atlantic Coastal Plain. Southeastern Naturalist ,10 (2), 333–344. https://doi.org/10.1656/058.010.0212
Worm, A. J., & Carpenter, J. P. (2021). Description of Black-throated Green Warbler (Wayne’s) (Setophaga virens waynei ) Nests in Coastal North Carolina. The Chat , 85 (2), 41–44.
Youtz, J., Miller, K. D., Bowers, E. K., Rogers, S. L., Bulluck, L. P., Johnson, M., … Ames, E. M. (2020). Bergmann’s rule is followed at multiple stages of postembryonic development in a long‐distance migratory songbird. Ecology and Evolution , 10 (19), 10672–10686. https://doi.org/10.1002/ece3.6721
Zink, R. M. (2004). The role of subspecies in obscuring avian biological diversity and misleading conservation policy. Proceedings of the Royal Society B: Biological Sciences , 271 (1539), 561–564. https://doi.org/10.1098/rspb.2003.2617