Glaucopysche alexis annotation
Prior to annotation, a de novo repeat library was made using
RepeatModeller v2.0.1 (27) and was then provided to RepeatMasker v4.1.1
to detect and mask repetitive sequences (28). Protein-coding genes and
transcripts were predicted using BRAKER2 v2.0.6 (29), using protein
hints which were generated using the ProtHint protein mapping pipeline
v2.6 (30) with the reference protein sequences for arthropods from
OrthoDB (31) as homology evidence.