Filtration step C. carcharias C. carcharias excl.
elasm-11022 & elasm-247 C. Carcharias excl.
elasm-11022 C. leucas C. maximus C. maximus excl.
elasm-1437 G. galeus I. oxyrinchus L. nasus S. acanthias
Whole genome
Biallelic SNPs 40,243 36,251 39,072 48,410 133,530 111,992 35,703 76,911 99,094 53,063
< 0.2 missing genotype 13,881 15,623 15,668 27,630 63,221 52,955 22,753 56,938 67,591 32,331
Minimum depth 5x 7,566 8,670 8,808 15,986 42,442 32,879 13,040 37,770 43,243 18,887
Target regions only
Biallelic SNPs 3,927 2,939 3,336 30,240 20,793 11,172 22,219 9,651 12,489 33,759
< 0.2 missing genotype 3,688 2,811 3,182 17,131 18,769 9,725 14,573 9,390 12,126 21,011
Minimum depth 5x 2,875 2,617 2,923 9,655 17,433 8,874 8,504 9,024 11,711 12,246