Data availability
The example SNP dataset distributed with SNPfiltR can be directly
accessed by downloading the SNPfiltR package from CRAN and
loading the dataset into the working environment, using the following
code install.packages(“SNPfiltR”); data(vcfR.example) , in an R
session. The UCE SNP dataset used for the SNPfiltR UCE SNP
filtering vignette is publicly available for download at:
(datadryad.org/stash/dataset/doi:10.5061/dryad.qh8sh). The RADseq SNP
dataset used to generate the example SNP filtering pipeline shown in
this paper will be released in a Dryad repository upon manuscript
acceptance. The SNPfiltR package is stably documented on github at:
github.com/DevonDeRaad/RADstackshelpR and at the dedicated site:
devonderaad.github.io/SNPfiltR/