REFERENCES
[1] Macek, B., Forchhammer, K., Hardouin, J., Weber-Ban, E., Grangeasse, C., & Mijakovic, I. (2019). Protein post-translational modifications in bacteria. Nat Rev Microbiol, 17 (11), 651-664. doi:10.1038/s41579-019-0243-0
[2] Xu, H., Wang, Y., Lin, S., Deng, W., Peng, D., Cui, Q., & Xue, Y. (2018). PTMD: A Database of Human Disease-associated Post-translational Modifications. Genom Proteom Bioinf, 16 (4), 244-251. doi:10.1016/j.gpb.2018.06.004
[3] Hu, L. I., Lima, B. P., & Wolfe, A. J. (2010). Bacterial protein acetylation: the dawning of a new age. Mol Microbiol, 77 (1), 15-21. doi:10.1111/j.1365-2958.2010.07204.x
[4] Christensen, D. G., Xie, X., Basisty, N., Byrnes, J., McSweeney, S., Schilling, B., & Wolfe, A. J. (2019). Post-translational Protein Acetylation: An Elegant Mechanism for Bacteria to Dynamically Regulate Metabolic Functions. Front Microbiol, 10 , 1604. doi:10.3389/fmicb.2019.01604
[5] Bradley, D. (2022). The evolution of post-translational modifications. Curr Opin Genet Dev, 76 , 101956. doi:10.1016/j.gde.2022.101956
[6] Barka, E. A., Vatsa, P., Sanchez, L., Gaveau-Vaillant, N., Jacquard, C., Meier-Kolthoff, J. P., . . . van Wezel, G. P. (2016). Taxonomy, Physiology, and Natural Products of Actinobacteria.Microbiol Mol Biol Rev, 80 (1), 1-43. doi:10.1128/MMBR.00019-15
[7] Park, J. W., & Yoon, Y. J. (2019). Recent advances in the discovery and combinatorial biosynthesis of microbial 14-membered macrolides and macrolactones. J Ind Microbiol Biotechnol, 46 (3-4), 445-458. doi:10.1007/s10295-018-2095-4
[8] Ke, X., Jiang, X., Huang, M., Tian, X., & Chu, J. (2022). Engineering of succinyl-CoA metabolism in view of succinylation regulation to improve the erythromycin production. Appl Microbiol Biotechnol, 106 (13-16), 5153-5165. doi:10.1007/s00253-022-12060-4
[9] Colak, G., Xie, Z., Zhu, A. Y., Dai, L., Lu, Z., Zhang, Y., . . . Tan, M. (2013). Identification of lysine succinylation substrates and the succinylation regulatory enzyme CobB in Escherichia coli. Mol Cell Proteomics, 12 (12), 3509-3520. doi:10.1074/mcp.M113.031567
[10] Zhang, H., Li, P., Ren, S., Cheng, Z., Zhao, G., & Zhao, W. (2019). ScCobB2-mediated Lysine Desuccinylation Regulates Protein Biosynthesis and Carbon Metabolism in Streptomyces coelicolor .Mol Cell Proteomics, 18 (10), 2003-2017. doi:10.1074/mcp.RA118.001298
[11] Zhang, M., Liu, T., Wang, L., Huang, Y., Fan, R., Ma, K., . . . Xu, J. Y. (2023). Global landscape of lysine acylomes in Bacillus subtilis. J Proteomics, 271 , 104767. doi:10.1016/j.jprot.2022.104767
[12] Hasan, M. M., & Kurata, H. (2018). GPSuc: Global Prediction of Generic and Species-specific Succinylation Sites by aggregating multiple sequence features. PLoS One, 13 (10), e0200283. doi:10.1371/journal.pone.0200283
[13] An, H., Ordureau, A., Korner, M., Paulo, J. A., & Harper, J. W. (2020). Systematic quantitative analysis of ribosome inventory during nutrient stress. Nature, 583 (7815), 303-309. doi:10.1038/s41586-020-2446-y
[14] Zhao, Y., Han, Y., Sun, Y., Wei, Z., Chen, J., Niu, X., . . . Gao, X. (2020). Comprehensive Succinylome Profiling Reveals the Pivotal Role of Lysine Succinylation in Energy Metabolism and Quorum Sensing of Staphylococcus epidermidis. Front Microbiol, 11 , 632367. doi:10.3389/fmicb.2020.632367
[15] Hoie, M. H., Kiehl, E. N., Petersen, B., Nielsen, M., Winther, O., Nielsen, H., . . . Marcatili, P. (2022). NetSurfP-3.0: accurate and fast prediction of protein structural features by protein language models and deep learning. Nucleic Acids Res, 50 (W1), W510-W515. doi:10.1093/nar/gkac439
[16] Yu, J., Zhou, Y., Tanaka, I., & Yao, M. (2010). Roll: a new algorithm for the detection of protein pockets and cavities with a rolling probe sphere. Bioinformatics, 26 (1), 46-52. doi:10.1093/bioinformatics/btp599