Genus
Alignment strategy (% aligned)
Down-sampling
Taxa
SNPs
Chromo-somes
Avg. MAF
Heterozygote Frequency
Data retained after depth thresholding (%)
Juglans microcarpa (P1; 63%) none 228 114965 16 0.163 0.066 18.3
50% 226 113380 16 0.147 0.048 10.2
Regia (P2; 55%)
none
228
83355
16
0.191
0.093
16.4
50% 228 83515 16 0.168 0.064 10.7
Dual (P1+ P2; 76%)
none
224
65517
32
0.29
0.003
100
50% 222 64607 32 0.28 0.003 100
Pistacia atlantica (P1; 60%) none 731 33602 15 0.274 0.071 9.5
50% 714 23984 15 0.265 0.05 4.8
integerrima (P2; 57%) none 731 30202 15 0.22 0.094 10.1
50% 714 21099 15 0.205 0.067 7.7
Dual (P1+P2; 65%) none 725 13361 30 0.468 0.002 100
50% 725 11642 30 0.46 0.002 100