FIGURE 3. Scheme for optimization of in silico mate-pair
method (map method). Mate pairs generated from the first
(1st) reference were mapped to the second
(2nd) reference. Only mapped mate pairs that satisfied
the insert size of “0.8 L n ≤ L n’ ≤1.2 L n” and
that were also in the same direction were reserved for the following
scaffolding process during genome assembly.