Table 2: Canadian MPB average nucleotide diversity, Tajima’sD and FST estimates.
We used Popoolation2 (Kofler et al., 2011) and the final female genome
assembly to evaluate nucleotide diversity (π), differentiation
(FST ) and Tajima’s D between northern and
southern pool-seq datasets
Partition | Diversity (π)North | Diversity (π)South | Tajima's DNorth | Tajima's DSouth | FST(North vs South) |
Ancestral-autosomal region of neo-X | 1.267% | 1.265% | -0.965 | -1.050 | 0.038 |
Ancestral-X region of neo-X | 0.431% | 0.569% | -1.214 | -0.913 | 0.096 |
Autosomes | 1.016% | 1.194% | -0.790 | -0.813 | 0.067 |
Chromosome 2 | 0.741% | 0.859% | -0.880 | -0.950 | 0.063 |
Chromosome 3 | 0.996% | 1.195% | -0.793 | -0.805 | 0.068 |
Chromosome 4 | 1.301% | 1.587% | -0.599 | -0.496 | 0.092 |
Chromosome 5 | 0.986% | 1.197% | -0.824 | -0.838 | 0.068 |
Chromosome 6 | 0.926% | 1.117% | -0.791 | -0.895 | 0.064 |
Chromosome 7 | 0.949% | 1.096% | -0.738 | -0.784 | 0.062 |
Chromosome 8 | 0.838% | 1.021% | -0.804 | -0.789 | 0.068 |
Chromosome 9 | 1.077% | 1.203% | -0.846 | -0.916 | 0.055 |
Chromosome 10 | 1.191% | 1.431% | -0.867 | -0.879 | 0.059 |
Chromosome 11 | 1.256% | 1.547% | -0.840 | -0.873 | 0.062 |
Chromosome 12 | 1.723% | 2.079% | -0.749 | -0.868 | 0.058 |