SSR nr. |
SSR type |
Locus |
Region |
SSR motif |
size |
star |
end |
Location |
1 |
p5 |
spacer |
LSC |
ATTTT |
15 |
5331 |
5345 |
rps16-chlB |
2 |
p1 |
spacer |
LSC |
G |
14 |
7040 |
7053 |
chlB-trnQ(UGG) |
3 |
p1 |
spacer |
LSC |
C |
11 |
8373 |
8383 |
trnS(GCU)-psaM |
4 |
p1 |
intron |
LSC |
A |
12 |
9401 |
9412 |
trnG(UCC) |
5 |
p4 |
intron |
LSC |
AATT |
12 |
9648 |
9659 |
trnG(UCC) |
6 |
p1 |
spacer |
LSC |
G |
16 |
13299 |
13314 |
atpF-atpH |
7 |
p1 |
spacer |
LSC |
C |
12 |
14280 |
14291 |
atpH-atpI |
8 |
p1 |
spacer |
LSC |
C |
12 |
15231 |
15242 |
atpI-rps2 |
9 |
p1 |
intron |
LSC |
C |
10 |
22475 |
22484 |
rpoC1 |
10 |
p1 |
spacer |
LSC |
A |
11 |
23468 |
23478 |
rpoC1-rpoB |
11 |
p1 |
spacer |
LSC |
C |
10 |
26793 |
26802 |
rpoB-trnD(GUC) |
12 |
p4 |
spacer |
LSC |
ATAG |
12 |
27725 |
27736 |
rpoB-trnD(GUC) |
13 |
p1 |
spacer |
LSC |
T |
13 |
28419 |
28431 |
trnE(UUC)-psbM |
14 |
p4 |
spacer |
LSC |
TGAT |
12 |
28511 |
28522 |
trnE(UUC)-psbM |
15 |
p1 |
spacer |
LSC |
A |
10 |
29560 |
29569 |
ycf66 |
16 |
p1 |
spacer |
LSC |
G |
14 |
29640 |
29653 |
ycf66 |
17 |
p1 |
spacer |
LSC |
G |
10 |
31641 |
31650 |
trnC(GCA)-trnG(GCC) |
18 |
p1 |
spacer |
LSC |
A |
10 |
31715 |
31724 |
trnC(GCA)-trnG(GCC) |
19 |
p1 |
spacer |
LSC |
C |
10 |
32102 |
32111 |
trnG(GCC)-psbZ |
20 |
p4 |
spacer |
LSC |
TATC |
16 |
33543 |
33558 |
trnS(UGA)-psbC |
21 |
p4 |
spacer |
LSC |
ATAG |
12 |
33562 |
33573 |
trnS(UGA)-psbC |
22 |
p1 |
spacer |
LSC |
A |
10 |
37593 |
37602 |
psbD-trnT(GGU) |
23 |
p1 |
intron |
LSC |
A |
11 |
44104 |
44114 |
ycf3 |
24 |
p1 |
intron |
LSC |
T |
13 |
44123 |
44135 |
ycf3 |
25 |
p1 |
intron |
LSC |
C |
11 |
45216 |
45226 |
ycf3 |
26 |
p1 |
spacer |
LSC |
T |
10 |
45601 |
45610 |
ycf3-trnS(GGA) |
27 |
p1 |
spacer |
LSC |
G |
10 |
47798 |
47807 |
rps4-trnL(CAA) |
28 |
p1 |
spacer |
LSC |
A |
10 |
51902 |
51911 |
trnV(UAC)-trnM(CAU) |
29 |
p1 |
spacer |
LSC |
T |
11 |
56710 |
56720 |
trnR(UCG)-accD |
30 |
p4 |
spacer |
LSC |
TATT |
12 |
57765 |
57776 |
accD-psaI |
31 |
p2 |
spacer |
LSC |
AT |
18 |
58231 |
58248 |
accD-psaI |
32 |
p2 |
spacer |
LSC |
TA |
12 |
62570 |
62581 |
petA-psbJ |
33 |
p1 |
spacer |
LSC |
A |
10 |
68052 |
68061 |
rpl20-rps12 |
34 |
p1 |
spacer |
LSC |
T |
11 |
68120 |
68130 |
rpl20-rps12 |
35 |
p4 |
spacer |
LSC |
GATA |
12 |
69048 |
69059 |
rps12-clpP |
36 |
p1 |
intron |
LSC |
C |
11 |
69574 |
69584 |
chlP |
37 |
p1 |
intron |
LSC |
T |
11 |
69615 |
69625 |
chlP |
38 |
p1 |
intron |
LSC |
T |
11 |
70413 |
70423 |
chlP |
39 |
p2 |
intron |
LSC |
CT |
12 |
70704 |
70715 |
chlP |
40 |
p2 |
spacer |
LSC |
AT |
12 |
79990 |
80001 |
rps8-rpl14 |
41 |
p1 |
intron |
LSC |
T |
12 |
81564 |
81575 |
rpl16 |
42 |
p1 |
spacer |
LSC |
T |
10 |
85769 |
85778 |
rpl23-trnI(CAU) |
43 |
p2 |
spacer |
IRA |
AT |
12 |
87653 |
87664 |
trnT(UGU) |
44 |
p4 |
spacer |
IRA |
TCTT |
12 |
96474 |
96485 |
rrn16-rps12 |
45 |
p1 |
spacer |
IRA |
A |
12 |
97573 |
97584 |
rrn16-rps12 |
46 |
p1 |
spacer |
SSC |
A |
10 |
111684 |
111693 |
ndhF-rpl21 |
47 |
p3 |
spacer |
SSC |
AAT |
12 |
112846 |
112857 |
rpl32-trnP(GGG) |
48 |
p2 |
spacer |
SSC |
TA |
12 |
112860 |
112871 |
rpl32-trnP(GGG) |
49 |
p3 |
spacer |
SSC |
TAT |
12 |
112873 |
112884 |
rpl32-trnP(GGG) |
50 |
p1 |
spacer |
SSC |
A |
10 |
113225 |
113234 |
trnP(GGG)-trnL(UAG) |
51 |
p1 |
spacer |
SSC |
T |
11 |
113467 |
113477 |
trnL(UAG)-ccsA |
52 |
p1 |
spacer |
SSC |
A |
10 |
116602 |
116611 |
ndhD-psaC |
53 |
p4 |
spacer |
SSC |
AATT |
12 |
116610 |
116621 |
ndhD-psaC |
54 |
p1 |
spacer |
SSC |
G |
11 |
117154 |
117164 |
psaC-ndhE |
55 |
p1 |
spacer |
SSC |
T |
11 |
118927 |
118937 |
ndhI-ndhA |
56 |
p2 |
spacer |
SSC |
AT |
16 |
118966 |
118981 |
ndhI-ndhA |
57 |
p1 |
intron |
SSC |
T |
17 |
120503 |
120519 |
ndhA |
58 |
p1 |
spacer |
SSC |
A |
10 |
122795 |
122804 |
rps15-ycf1 |
59 |
p1 |
spacer |
IRB |
T |
12 |
142438 |
142449 |
rps12-rrn16 |
60 |
p4 |
spacer |
IRB |
AAAG |
12 |
143536 |
143547 |
rps12-rrn16 |
61 |
p2 |
spacer |
IRB |
AT |
12 |
152358 |
152369 |
trnT(UGU) |