SSR nr. |
SSR type |
Locus |
Region |
SSR motif |
size |
star |
end |
Location |
1 |
p1 |
spacer |
LSC |
G |
12 |
7094 |
7105 |
chlB-trnQ(UUG) |
2 |
p1 |
spacer |
LSC |
T |
10 |
8416 |
8425 |
trnS(GUC)-psaM |
3 |
p2 |
spacer |
LSC |
AT |
14 |
8532 |
8545 |
trnS(GUC)-psaM |
4 |
p4 |
intron |
LSC |
AATT |
12 |
9703 |
9714 |
trnG(UCC) |
5 |
p1 |
intron |
LSC |
C |
10 |
22538 |
22547 |
trnG(UCC) |
6 |
p1 |
spacer |
LSC |
T |
10 |
27270 |
27279 |
rpoB-trnD(GUC) |
7 |
p4 |
spacer |
LSC |
ATAG |
12 |
27782 |
27793 |
rpoB-trnD(GUC) |
8 |
p4 |
spacer |
LSC |
TGAT |
12 |
28568 |
28579 |
trnE(UUC)-psbM |
9 |
p1 |
spacer |
LSC |
G |
14 |
29700 |
29713 |
ycf66 |
10 |
p1 |
spacer |
LSC |
G |
11 |
31714 |
31724 |
trnC(GCA)-trnG(GCC) |
11 |
p1 |
spacer |
LSC |
C |
12 |
32174 |
32185 |
trnG(GCC)-psbZ |
12 |
p4 |
spacer |
LSC |
TATC |
12 |
33610 |
33621 |
trnS(UGA)-psbC |
13 |
p4 |
spacer |
LSC |
ATAG |
12 |
33625 |
33636 |
trnS(UGA)-psbC |
14 |
p1 |
spacer |
LSC |
T |
10 |
36730 |
36739 |
psbD-trnT(GGU) |
15 |
p2 |
spacer |
LSC |
AG |
16 |
36835 |
36850 |
psbD-trnT(GGU) |
16 |
p1 |
intron |
LSC |
T |
13 |
44201 |
44213 |
ycf3 |
17 |
p1 |
spacer |
LSC |
T |
10 |
45678 |
45687 |
ycf3-trnS(GGA) |
18 |
p1 |
spacer |
LSC |
G |
10 |
47521 |
47530 |
rps4-trnL(CAA) |
19 |
p1 |
spacer |
LSC |
G |
10 |
48027 |
48036 |
rps4-trnL(CAA) |
20 |
p1 |
spacer |
LSC |
A |
13 |
48988 |
49000 |
trnL(CAA)-trnF(GAA) |
21 |
p1 |
spacer |
LSC |
T |
10 |
49907 |
49916 |
ndhJ-ndhK |
22 |
p1 |
spacer |
LSC |
A |
10 |
52147 |
52156 |
trnV(UAC)-trnM(CAU) |
23 |
p1 |
spacer |
LSC |
T |
11 |
54614 |
54624 |
atpB-rbcL |
24 |
p1 |
spacer |
LSC |
T |
10 |
56964 |
56973 |
trnR(UCG)-accD |
25 |
p4 |
spacer |
LSC |
TATT |
12 |
58020 |
58031 |
accD-psaI |
26 |
p2 |
spacer |
LSC |
AT |
14 |
58486 |
58499 |
accD-psaI |
27 |
p2 |
spacer |
LSC |
TA |
16 |
62833 |
62848 |
petA-psbJ |
28 |
p5 |
spacer |
LSC |
CTTTC |
15 |
71752 |
71766 |
petG-trnW(CCA) |
29 |
p1 |
spacer |
LSC |
C |
12 |
72879 |
72890 |
psaJ-rpl33 |
30 |
p1 |
spacer |
LSC |
A |
10 |
74479 |
74488 |
rpl20-rps12 |
31 |
p1 |
spacer |
LSC |
T |
10 |
74547 |
74556 |
rpl20-rps12 |
32 |
p4 |
spacer |
LSC |
GATA |
12 |
75482 |
75493 |
rps12-clpP |
33 |
p1 |
intron |
LSC |
C |
10 |
76004 |
76013 |
clpP |
34 |
p1 |
intron |
LSC |
T |
14 |
76044 |
76057 |
clpP |
35 |
p1 |
intron |
LSC |
T |
10 |
81233 |
81242 |
petB |
36 |
p2 |
spacer |
LSC |
AT |
18 |
86384 |
86401 |
rps8-rpl14 |
37 |
p1 |
intron |
LSC |
T |
11 |
88315 |
88325 |
rpl16 |
38 |
p1 |
intron |
LSC |
C |
10 |
91506 |
91515 |
rpl2 |
39 |
p2 |
spacer |
IRB |
AT |
12 |
94055 |
94066 |
trnT(UGU) |
40 |
p1 |
spacer |
IRB |
A |
12 |
101175 |
101186 |
trnI(GAU)-rrn16 |
41 |
p4 |
spacer |
IRB |
TCTT |
12 |
103479 |
103490 |
rrn16-rps12 |
42 |
p1 |
spacer |
IRB |
A |
14 |
104578 |
104591 |
rrn16-rps12 |
43 |
p1 |
spacer |
IRB |
T |
10 |
106780 |
106789 |
rps7-psbA |
44 |
p3 |
spacer |
SSC |
AAT |
12 |
119836 |
119847 |
rpl32-trnP(GGG) |
45 |
p2 |
spacer |
SSC |
TA |
18 |
119850 |
119867 |
rpl32-trnP(GGG) |
46 |
p3 |
spacer |
SSC |
TAT |
12 |
119869 |
119880 |
rpl32-trnP(GGG) |
47 |
p4 |
spacer |
SSC |
GAAA |
12 |
120219 |
120230 |
trnP(GGG)-trnL(UAG) |
48 |
p1 |
spacer |
SSC |
T |
12 |
120461 |
120472 |
trnL(UAG)-ccsA |
49 |
p1 |
spacer |
SSC |
A |
11 |
121731 |
121741 |
ccsA-ndhD |
50 |
p1 |
spacer |
SSC |
A |
11 |
123596 |
123606 |
ndhD-psaC |
51 |
p4 |
spacer |
SSC |
AATT |
12 |
123605 |
123616 |
ndhD-psaC |
52 |
p1 |
spacer |
SSC |
T |
10 |
123615 |
123624 |
ndhD-psaC |
53 |
p1 |
spacer |
SSC |
G |
15 |
124153 |
124167 |
psaC-ndhE |
54 |
p1 |
spacer |
SSC |
A |
24 |
125982 |
125992 |
ndhI-ndhA |
55 |
p2 |
spacer |
SSC |
AT |
14 |
125992 |
126005 |
ndhI-ndhA |
56 |
p1 |
spacer |
SSC |
A |
13 |
126041 |
126053 |
ndhI-ndhA |
57 |
p2 |
intron |
SSC |
TA |
14 |
127030 |
127043 |
ndhA |
58 |
p1 |
spacer |
SSC |
A |
11 |
129846 |
129856 |
rps15-ycf1 |
59 |
p1 |
spacer |
SSC |
C |
14 |
135178 |
135191 |
ycf1-chlN |
60 |
p4 |
spacer |
SSC |
AAAT |
16 |
135410 |
135425 |
ycf1-chlN |
61 |
p1 |
spacer |
IRA |
A |
10 |
147274 |
147283 |
psbA-rps7 |
62 |
p1 |
spacer |
IRA |
T |
14 |
149472 |
149485 |
rps12-rrn16 |
63 |
p4 |
spacer |
IRA |
AAAG |
12 |
150572 |
150583 |
rps12-rrn16 |
64 |
p1 |
spacer |
IRA |
T |
12 |
152877 |
152888 |
rrn16-trnI(GAU) |
65 |
p2 |
spacer |
IRA |
AT |
12 |
159997 |
160008 |
trnT(UGU) |