SSR nr. SSR type Locus Region SSR motif size star end Location
1 p1 spacer LSC A 15 3517 3531 matK-rps16
2 p1 spacer LSC T 10 3614 3623 matK-rps16
3 p1 intron LSC T 10 4364 4373 rps16
4 p1 intron LSC A 11 4861 4871 rps16
5 p1 spacer LSC G 10 6893 6902 chlB-trnQ(UUG)
6 p1 spacer LSC A 12 7068 7619 psbK-psbI
7 p2 spacer LSC TA 12 7621 7632 psbK-psbI
8 p1 spacer LSC C 17 8230 8246 trnS(GCU)-psaM
9 p1 spacer LSC A 11 8332 8342 trnS(GCU)-psaM
10 p1 spacer LSC T 12 8359 8370 trnS(GCU)-psaM
11 p1 intron LSC T 12 9637 9648 trnG(UCC)
12 p2 intron LSC TC 14 12639 12652 atpF
13 p1 spacer LSC C 16 13302 13317 atpF-atpH
14 p1 spacer LSC T 13 15171 15183 atpI-rps2
15 p1 spacer LSC A 10 23386 23395 rpoC1-rpoB
16 p1 spacer LSC T 12 27644 27655 rpoB-trnD(GUC)
17 p1 spacer LSC A 11 28256 28266 trnE(UUC)-psbM
18 p1 spacer LSC T 22 28291 28312 trnE(UUC)-psbM
19 p1 spacer LSC A 14 29431 29444 ycf66
20 p1 spacer LSC G 14 29522 29535 ycf66
21 p1 spacer LSC T 13 30206 30218 petN-trnC(GCA)
22 p1 spacer LSC T 11 30804 30814 trnC(GCA)-trnG(GCC)
23 p4 spacer LSC TATC 16 33672 33687 trnS(UGA)-psbC
24 p4 spacer LSC ATAG 16 33691 33706 trnS(UGA)-psbC
25 p1 spacer LSC T 11 36882 36892 psbD-trnT(GGU)
26 p1 spacer LSC A 10 36920 36929 psbD-trnT(GGU)
27 p1 spacer LSC T 19 37334 37352 psbD-trnT(GGU)
28 p1 spacer LSC T 21 37588 37608 psbD-trnT(GGU)
29 p4 spacer LSC ATAG 12 38356 38367 trnfM(CAU)-rps14
30 p1 spacer LSC T 10 38371 38380 trnfM(CAU)-rps14
31 p1 intron LSC T 21 44159 44179 ycf3
32 p1 spacer LSC T 23 45660 45682 ycf3-trnS(GGA)
33 p1 spacer LSC T 18 45968 45985 ycf3-trnS(GGA)
34 p1 spacer LSC T 13 46269 46281 trnS(GGA)-rps4
35 p1 intron LSC A 11 48282 48292 trnL(CAA)
36 p2 spacer LSC TA 12 48647 48658 trnL(CAA)-trnF(GAA)
37 p2 spacer LSC TA 24 48661 48684 trnL(CAA)-trnF(GAA)
38 p1 spacer LSC T 12 51179 51190 ndhC-trnV(UAC)
39 p1 intron LSC T 10 51514 51523 trnV(UAC)
40 p1 spacer LSC A 16 52031 52046 trnV(UAC)-trnM(CAU)
41 p1 spacer LSC T 10 54498 54507 atpB-rbcL
42 p1 spacer LSC T 12 56441 56452 rbcL-trnR(UCG)
43 p1 spacer LSC T 14 56859 56872 trnR(UCG)-accD
44 p1 spacer LSC T 10 58386 58395 accD-psaI
45 p2 spacer LSC AT 16 62683 62698 petA-psbJ
46 p1 spacer LSC T 13 63021 63033 petA-psbJ
47 p1 spacer LSC T 16 64669 64684 psbE-petL
48 p1 spacer LSC A 12 65041 65052 petL-petG
49 p1 spacer LSC C 10 66553 66562 psaJ-rpl33
50 p1 spacer LSC A 13 67731 67743 rpl20-rps12
51 p1 spacer LSC T 13 67974 67986 rpl20-rps12
52 p1 spacer LSC A 15 68134 68148 rpl20-rps12
53 p1 spacer LSC T 11 68406 68416 rpl20-rps12
54 p4 spacer LSC TATC 12 69106 69117 rps12-clpP
55 p2 intron LSC TA 12 70495 70506 clpP
56 p1 intron LSC C 14 70536 70549 clpP
57 p1 spacer LSC A 12 71504 71515 clpP-psbB
58 p1 spacer LSC T 11 71597 71607 clpP-psbB
59 p1 spacer LSC A 18 73387 73404 psbB-psbT
60 p1 intron LSC T 10 74735 74744 petB
61 p1 spacer LSC T 10 77271 77280 petD-ropA
62 p1 spacer LSC T 11 77328 77338 petD-ropA
63 p1 spacer LSC T 14 80050 80063 rps8-rpl14
64 p2 spacer LSC AT 14 80083 80096 rps8-rpl14
65 p2 spacer LSC AT 18 80177 80194 rps8-rpl14
66 p1 spacer LSC A 13 81030 81042 rpl14-rpl16
67 p1 intron LSC T 11 81765 81775 rpl16
68 p1 intron LSC T 11 82107 82117 rpl16
69 p2 spacer LSC AT 14 82324 82337 rpl16-rps3
70 p1 intron LSC A 10 84458 84467 rpl2
71 p1 intron LSC A 10 84570 84549 rpl2
72 p2 intron LSC AT 12 84561 84572 rpl2
73 p1 intron LSC T 14 84852 84865 rpl2
74 p1 spacer LSC T 13 85845 85857 rpl23-trnI(CAU)
75 p1 spacer LSC T 13 85991 86003 rpl23-trnI(CAU)
76 p4 gene IRA CTAC 12 91186 91197 rrn23
77 p2 intron IRA AG 12 94186 94197 trnI(CAU)
78 p4 spacer IRA TCTT 12 97474 97485 rrn16-rps12
79 p1 spacer IRA T 14 98567 98580 rrn16-rps12
80 p1 spacer IRA A 12 102544 102555 trnH(GUG)-ycf2
81 p4 CDS IRA AGAA 12 107744 107755 ycf2
82 p1 spacer IRA A 15 109158 109172 ycf2-trnN(GUU)
83 p1 spacer SSC T 11 110207 110217 trnN(GUU)-ndhF
84 p1 spacer SSC A 14 113545 113558 rpl32-trnP(GGG)
85 p1 spacer SSC A 11 113825 113835 rpl32-trnP(GGG)
86 p1 spacer SSC T 15 113869 113883 rpl32-trnP(GGG)
87 p1 spacer SSC A 13 114374 114386 trnL(UAG)-ccsA
88 p2 spacer SSC AT 20 114464 114483 trnL(UAG)-ccsA
89 p1 spacer SSC A 13 115715 115727 ccsA-ndhD
90 p1 spacer SSC A 14 115972 115985 ccsA-ndhD
91 p1 spacer SSC A 14 117633 117646 ndhD-psaC
92 p2 spacer SSC CT 12 119317 119328 ndhG-ndhI
93 p2 intron SSC AT 16 121036 121051 ndhA
94 p1 intron SSC T 11 121544 121554 ndhA
95 p1 intron SSC A 11 123840 123850 rps15-ycf1
96 p1 spacer IRB T 15 133684 133698 trnN(GUU)-ycf2
97 p4 CDS IRB TTTC 12 135100 135111 ycf2
98 p1 spacer IRB T 12 140301 140312 ycf2-trnH(GUG)
99 p1 spacer IRB A 14 144276 144289 rps12-rrn16
100 p4 spacer IRB AAAG 12 145370 145381 rps12-rrn16
101 p2 intron IRB TC 12 148658 148669 trnI(GUA)
102 p4 gene IRB AGGT 12 151657 151668 rrn23