SSR nr. |
SSR type |
Locus |
Region |
SSR motif |
size |
star |
end |
Location |
1 |
p1 |
spacer |
LSC |
G |
10 |
3677 |
3686 |
matK-rps16 |
2 |
p1 |
spacer |
LSC |
G |
11 |
7015 |
7025 |
chlB-trnQ(UUG) |
3 |
p2 |
spacer |
LSC |
AT |
14 |
8451 |
8464 |
trnS(GUC)-psaM |
4 |
p4 |
intron |
LSC |
AATT |
12 |
9622 |
9633 |
trnG(UCC) |
5 |
p1 |
spacer |
LSC |
C |
10 |
14251 |
14260 |
atpH-atpI |
6 |
p1 |
spacer |
LSC |
C |
10 |
15197 |
15206 |
atpI-rps2 |
7 |
p1 |
intron |
LSC |
C |
10 |
22460 |
22469 |
rpoC1 |
8 |
p1 |
spacer |
LSC |
T |
10 |
27192 |
27201 |
rpoB-trnD(GUC) |
9 |
p4 |
spacer |
LSC |
ATAG |
12 |
27704 |
27715 |
rpoB-trnD(GUC) |
10 |
p4 |
spacer |
LSC |
TGAT |
12 |
28490 |
28501 |
trnE(UUC)-psbM |
11 |
p1 |
spacer |
LSC |
G |
17 |
29622 |
29638 |
ycf66 |
12 |
p1 |
spacer |
LSC |
G |
11 |
31628 |
31638 |
trnC(GCA)-trnG(GCC) |
13 |
p1 |
spacer |
LSC |
C |
10 |
32088 |
32097 |
trnG(GCC)-psbZ |
14 |
p4 |
spacer |
LSC |
TATC |
12 |
33522 |
33533 |
trnS(UGA)-psbC |
15 |
p4 |
spacer |
LSC |
ATAG |
12 |
33537 |
33548 |
trnS(UGA)-psbC |
16 |
p1 |
spacer |
LSC |
T |
10 |
36642 |
36651 |
psbD-trnT(GGU) |
17 |
p2 |
spacer |
LSC |
AG |
24 |
36747 |
36770 |
psbD-trnT(GGU) |
18 |
p1 |
intron |
LSC |
A |
10 |
44100 |
44109 |
ycf3 |
19 |
p1 |
intron |
LSC |
T |
12 |
44122 |
44133 |
ycf3 |
20 |
p1 |
spacer |
LSC |
T |
10 |
45598 |
45607 |
ycf3-trnS(GGA) |
21 |
p1 |
spacer |
LSC |
G |
10 |
47441 |
47450 |
rps4-trnL(CAA) |
22 |
p1 |
spacer |
LSC |
G |
10 |
47936 |
47945 |
rps4-trnL(CAA) |
23 |
p1 |
spacer |
LSC |
A |
14 |
48913 |
48926 |
trnL(CAA)-trnF(GAA) |
24 |
p1 |
spacer |
LSC |
T |
10 |
49833 |
49842 |
ndhJ-ndhK |
25 |
p1 |
spacer |
LSC |
A |
11 |
52073 |
52083 |
trnV(UAC)-trnM(CAU) |
26 |
p1 |
spacer |
LSC |
T |
11 |
54541 |
54551 |
atpB-rbcL |
27 |
p1 |
spacer |
LSC |
T |
10 |
56891 |
56900 |
trnR(UCG)-accD |
28 |
p4 |
spacer |
LSC |
TATT |
12 |
57947 |
57958 |
accD-psaI |
29 |
p2 |
spacer |
LSC |
AT |
14 |
58413 |
58426 |
accD-psaI |
30 |
p2 |
spacer |
LSC |
TA |
16 |
62759 |
62774 |
petA-psbJ |
31 |
p1 |
spacer |
LSC |
C |
11 |
72815 |
72825 |
psaJ-rpl33 |
32 |
p1 |
spacer |
LSC |
A |
11 |
74414 |
74424 |
rpl20-rps12 |
33 |
p1 |
spacer |
LSC |
T |
10 |
74483 |
74492 |
rpl20-rps12 |
34 |
p4 |
spacer |
LSC |
GATA |
12 |
75418 |
75429 |
rps12-clpP |
35 |
p1 |
intron |
LSC |
C |
11 |
75940 |
75950 |
clpP |
36 |
p1 |
intron |
LSC |
T |
10 |
75981 |
75990 |
clpP |
37 |
p1 |
intron |
LSC |
T |
11 |
81166 |
81176 |
petB |
38 |
p1 |
spacer |
LSC |
A |
11 |
86310 |
86320 |
rps8-rpl14 |
39 |
p2 |
spacer |
LSC |
AT |
16 |
86320 |
86335 |
rps8-rpl14 |
40 |
p1 |
spacer |
LSC |
T |
11 |
86335 |
86345 |
rps8-rpl14 |
41 |
p1 |
intron |
LSC |
T |
12 |
88251 |
88262 |
rpl16 |
42 |
p1 |
intron |
LSC |
C |
10 |
91441 |
91450 |
rpl2 |
43 |
p2 |
spacer |
IRB |
AT |
12 |
93990 |
94001 |
trnT(UGU) |
44 |
p1 |
spacer |
IRB |
A |
12 |
101110 |
101121 |
trnI(GAU)-rrn16 |
45 |
p4 |
spacer |
IRB |
TCTT |
12 |
103414 |
103425 |
rrn16-rps12 |
46 |
p1 |
spacer |
IRB |
A |
12 |
104529 |
104540 |
rrn16-rps12 |
47 |
p3 |
spacer |
SSC |
AAT |
12 |
119784 |
119795 |
rpl32-trnP(GGG) |
48 |
p2 |
spacer |
SSC |
TA |
18 |
119798 |
119815 |
rpl32-trnP(GGG) |
49 |
p3 |
spacer |
SSC |
TAT |
12 |
119817 |
119828 |
rpl32-trnP(GGG) |
50 |
p4 |
spacer |
SSC |
GAAA |
12 |
120167 |
120178 |
trnP(GGG)-trnL(UAG) |
51 |
p1 |
spacer |
SSC |
T |
13 |
120409 |
120421 |
trnL(UAG)-ccsA |
52 |
p1 |
spacer |
SSC |
A |
11 |
121680 |
121690 |
ccsA-ndhD |
53 |
p1 |
spacer |
SSC |
A |
13 |
123545 |
123557 |
ndhD-psaC |
54 |
p1 |
spacer |
SSC |
T |
10 |
123566 |
123575 |
ndhD-psaC |
55 |
p1 |
spacer |
SSC |
G |
31 |
124104 |
124134 |
psaC-ndhE |
56 |
p1 |
spacer |
SSC |
A |
24 |
125949 |
125961 |
ndhI-ndhA |
57 |
p2 |
spacer |
SSC |
AT |
12 |
125961 |
125972 |
ndhI-ndhA |
58 |
p2 |
intron |
SSC |
TA |
14 |
126999 |
127012 |
ndhA |
59 |
p1 |
spacer |
SSC |
C |
31 |
135145 |
135175 |
ycf1-chlN |
60 |
p4 |
spacer |
SSC |
AAAT |
16 |
135394 |
135409 |
ycf1-chlN |
61 |
p1 |
spacer |
IRA |
T |
12 |
149455 |
149466 |
rps12-rrn16 |
62 |
p4 |
spacer |
IRA |
AAAG |
12 |
150569 |
150580 |
rps12-rrn16 |
63 |
p1 |
spacer |
IRA |
T |
12 |
152874 |
152885 |
rrn16-trnI(GAU) |
64 |
p2 |
spacer |
IRA |
AT |
12 |
159994 |
160005 |
trnT(UGU) |