SSR nr. SSR type Locus Region SSR motif size star end Location
1 p1 intron LSC T 11 364 374 ndhB
2 p1 spacer LSC A 13 3443 3455 matK-rps16
3 p1 spacer LSC T 10 3539 3548 matK-rps16
4 p1 intron LSC T 11 4289 4299 rps16
5 p1 spacer LSC G 14 6799 6812 chlB-trnQ(UUG)
6 p1 spacer LSC A 24 7517 7527 psbK-psbI
7 p2 spacer LSC TA 12 7529 7540 psbK-psbI
8 p1 spacer LSC C 12 8126 8137 trnS(GCU)-psaM
9 p2 spacer LSC AT 16 8228 8243 trnS(GCU)-psaM
10 p1 spacer LSC T 10 8243 8252 trnS(GCU)-psaM
11 p1 spacer LSC G 11 8796 8806 ycf12-trnG(UCC)
12 p1 intron LSC C 13 9680 9692 trnG(UCC)
13 p1 spacer LSC C 10 14045 14054 atpH-atpI
14 p1 spacer LSC A 11 14072 14082 atpH-atpI
15 p1 spacer LSC T 12 15000 15011 atpI-rps2
16 p1 intron LSC T 13 22281 22293 rpoC1
17 p3 intron LSC AAG 12 22472 22483 rpoC1
18 p1 spacer LSC A 11 23228 23238 rpoC1-rpoB
19 p1 spacer LSC T 10 27592 27601 rpoB-trnD(GUC)
20 p1 spacer LSC A 12 28198 28209 trnE(UUC)-psbM
21 p1 spacer LSC A 12 29362 29373 ycf66
22 p2 spacer LSC AT 18 30354 30371 petN-trnC(GCA)
23 p1 spacer LSC G 12 31694 31705 trnC(GCA)-trnG(GCC)
24 p1 spacer LSC A 13 31775 31787 trnC(GCA)-trnG(GCC)
25 p1 spacer LSC A 12 32989 33000 trnS(UGA)-psbC
26 p1 spacer LSC T 13 33060 33072 trnS(UGA)-psbC
27 p4 spacer LSC ATCT 16 33593 33608 trnS(UGA)-psbC
28 p4 spacer LSC ATAG 12 33611 33622 trnS(UGA)-psbC
29 p1 spacer LSC T 11 36719 36729 psbD-trnT(GGU)
30 p1 spacer LSC A 10 36847 36856 psbD-trnT(GGU)
31 p1 spacer LSC T 19 37265 37283 psbD-trnT(GGU)
32 p1 spacer LSC A 11 37663 37673 psbD-trnT(GGU)
33 p1 intron LSC T 12 44223 44234 ycf3
34 p1 intron LSC C 11 45321 45331 ycf3
35 p1 spacer LSC T 15 45718 45732 ycf3-trnS(GGA)
36 p1 spacer LSC A 10 45774 45783 ycf3-trnS(GGA)
37 p1 spacer LSC T 12 45844 45855 ycf3-trnS(GGA)
38 p1 spacer LSC T 11 46314 46324 trnS(GGA)-rps4
39 p1 spacer LSC G 10 48017 48026 rps4-trnL(CAA)
40 p1 intron LSC A 14 48335 48348 trnL(CAA)
41 p1 spacer LSC T 13 48937 48949 trnL(CAA)-trnF(GAA)
42 p1 spacer LSC T 10 51278 51287 ndhC-trnV(UAC)
43 p1 spacer LSC A 11 51294 51304 ndhC-trnV(UAC)
44 p1 spacer LSC A 10 52139 52148 trnV(UAC)-trnM(CAU)
45 p2 spacer LSC AT 14 52234 52247 trnV(UAC)-trnM(CAU)
46 p1 spacer LSC T 13 54704 54716 atpB-rbcL
47 p1 spacer LSC T 12 56549 56560 rbcL-trnR(UCG)
48 p1 spacer LSC T 19 56970 56988 trnR(UCG)-accD
49 p4 spacer LSC TATT 12 58017 58028 accD-psaI
50 p1 spacer LSC A 10 58077 58086 accD-psaI
51 p1 spacer LSC T 11 58500 58510 accD-psaI
52 p1 spacer LSC C 11 62525 62535 petA-psbJ
53 p1 spacer LSC T 13 63154 63166 petA-psbJ
54 p1 spacer LSC T 11 64718 64728 psbE-petL
55 p1 spacer LSC T 10 65534 65543 petG-trnW(CCA)
56 p1 spacer LSC T 10 65933 65942 trnW(CCA)-trnP(UGG)
57 p1 spacer LSC C 10 66640 66649 psaJ-rpl33
58 p1 spacer LSC T 17 67329 67345 rps18-rpl20
59 p1 spacer LSC T 12 68303 68314 rpl20-rps12
60 p1 spacer LSC T 11 68506 68516 rpl20-rps12
61 p1 spacer LSC T 11 68763 68773 rpl20-rps12
62 p4 spacer LSC TATC 12 69219 69230 rps12-clpP
63 p4 spacer LSC GATA 12 69237 69248 rps12-clpP
64 p1 intron LSC C 17 69754 69770 clpP
65 p1 intron LSC C 11 70488 70498 clpP
66 p2 intron LSC AT 24 70624 70647 clpP
67 p1 spacer LSC A 11 71628 71638 clpP-psbB
68 p1 intron LSC T 16 74415 74430 petB
69 p1 intron LSC T 10 76554 76563 petD
70 p1 spacer LSC T 13 80161 80173 rps8-rpl14
71 p2 spacer LSC AT 18 80193 80210 rps8-rpl14
72 p1 spacer LSC A 14 80277 80290 rps8-rpl14
73 p2 spacer LSC TA 12 80291 80302 rps8-rpl14
74 p1 spacer LSC T 12 80311 80322 rps8-rpl14
75 p1 intron LSC T 12 81897 81908 rpl16
76 p4 intron LSC CCTC 12 82063 82074 rpl16
77 p1 intron LSC T 13 82236 82248 rpl16
78 p1 spacer LSC T 10 82462 82471 rpl16-rps3
79 p1 intron LSC A 15 84665 84679 rpl2
80 p1 spacer LSC A 12 85654 85665 rpl2-rpl23
81 p1 spacer LSC T 13 85967 85979 rpl23-trnI(CAU)
82 p1 spacer LSC T 11 86109 86119 rpl23-trnI(CAU)
83 p2 spacer IRB AT 12 87991 88002 trnT(UGU)
84 p2 spacer IRB AT 12 88446 88457 trnT(UGU)-trnR(ACG)
85 p1 spacer IRB T 13 89893 89905 trnR(ACG)-rrn5
86 p1 spacer IRB C 11 97421 97431 rrn16-rps12
87 p4 spacer IRB TCTT 12 97952 97963 rrn16-rps12
88 p1 spacer IRB T 11 99065 99075 rrn16-rps12
89 p1 spacer IRB A 12 103023 103034 trnH(GUG)-ycf2
90 p4 CDS IRB AGAA 12 108199 108210 ycf2
91 p1 spacer IRB A 23 109609 109631 ycf2-trnN(GUU)
92 p1 spacer IRB G 15 110408 110422 trnN(GUU)-ndhF
93 p1 spacer SSC T 10 113579 113588 rpl21-rpl32
94 p1 spacer SSC A 13 113692 113704 rpl21-rpl32
95 p2 spacer SSC AT 16 113704 113719 rpl21-rpl32
96 p1 spacer SSC A 11 114057 114067 rpl32-trnP(GGG)
97 p1 spacer SSC G 10 114311 114320 rpl32-trnP(GGG)
98 p1 spacer SSC T 13 114378 114390 rpl32-trnP(GGG)
99 p1 spacer SSC A 13 114717 114729 trnP(GGG)-trnL(UAG)
100 p1 spacer SSC A 11 114877 114887 trnL(UAG)-ccsA
101 p1 spacer SSC T 12 114956 114967 trnL(UAG)-ccsA
102 p1 spacer SSC A 11 118109 118119 ndhD-psaC
103 p1 spacer SSC T 12 118124 118135 ndhD-psaC
104 p1 spacer SSC G 13 118671 118683 psaC-ndhE
105 p2 spacer SSC TA 14 120486 120499 ndhI-ndhA
106 p1 spacer SSC A 13 120503 120515 ndhI-ndhA
107 p2 spacer SSC AT 20 120515 120534 ndhI-ndhA
108 p1 spacer SSC A 10 120579 120588 ndhI-ndhA
109 p1 intron SSC T 10 121499 121508 ndhA
110 p1 spacer SSC A 14 124291 124304 rps15-ycf1
111 p4 CDS SSC ACCA 12 129075 129086 ycf1
112 p1 spacer SSC C 13 129616 129628 ycf1-chlN
113 p1 spacer IRA C 15 132548 132562 chlL-trnN(GUU)
114 p1 spacer IRA T 23 133339 133361 trnN(GUU)-ycf2
115 p4 CDS IRA TTTC 12 134759 134770 ycf2
116 p1 spacer IRA T 12 139936 139947 ycf2-trnH(GUG)
117 p1 spacer IRA A 11 143895 143905 rps12-rrn16
118 p4 spacer IRA AAAG 12 145006 145017 rps12-rrn16
119 p1 spacer IRA G 11 145539 145549 rps12-rrn16
120 p1 spacer IRA A 13 153065 153077 rrn5-trnR(ACG)
121 p2 spacer IRA AT 12 154513 154524 trnR(ACG)-trnT(UGU)
122 p2 spacer IRA AT 12 154968 154979 trnT(UGU)