SSR nr. |
SSR type |
Locus |
Region |
SSR motif |
size |
star |
end |
Location |
1 |
p1 |
intron |
LSC |
T |
11 |
364 |
374 |
ndhB |
2 |
p1 |
spacer |
LSC |
A |
13 |
3443 |
3455 |
matK-rps16 |
3 |
p1 |
spacer |
LSC |
T |
10 |
3539 |
3548 |
matK-rps16 |
4 |
p1 |
intron |
LSC |
T |
11 |
4289 |
4299 |
rps16 |
5 |
p1 |
spacer |
LSC |
G |
14 |
6799 |
6812 |
chlB-trnQ(UUG) |
6 |
p1 |
spacer |
LSC |
A |
24 |
7517 |
7527 |
psbK-psbI |
7 |
p2 |
spacer |
LSC |
TA |
12 |
7529 |
7540 |
psbK-psbI |
8 |
p1 |
spacer |
LSC |
C |
12 |
8126 |
8137 |
trnS(GCU)-psaM |
9 |
p2 |
spacer |
LSC |
AT |
16 |
8228 |
8243 |
trnS(GCU)-psaM |
10 |
p1 |
spacer |
LSC |
T |
10 |
8243 |
8252 |
trnS(GCU)-psaM |
11 |
p1 |
spacer |
LSC |
G |
11 |
8796 |
8806 |
ycf12-trnG(UCC) |
12 |
p1 |
intron |
LSC |
C |
13 |
9680 |
9692 |
trnG(UCC) |
13 |
p1 |
spacer |
LSC |
C |
10 |
14045 |
14054 |
atpH-atpI |
14 |
p1 |
spacer |
LSC |
A |
11 |
14072 |
14082 |
atpH-atpI |
15 |
p1 |
spacer |
LSC |
T |
12 |
15000 |
15011 |
atpI-rps2 |
16 |
p1 |
intron |
LSC |
T |
13 |
22281 |
22293 |
rpoC1 |
17 |
p3 |
intron |
LSC |
AAG |
12 |
22472 |
22483 |
rpoC1 |
18 |
p1 |
spacer |
LSC |
A |
11 |
23228 |
23238 |
rpoC1-rpoB |
19 |
p1 |
spacer |
LSC |
T |
10 |
27592 |
27601 |
rpoB-trnD(GUC) |
20 |
p1 |
spacer |
LSC |
A |
12 |
28198 |
28209 |
trnE(UUC)-psbM |
21 |
p1 |
spacer |
LSC |
A |
12 |
29362 |
29373 |
ycf66 |
22 |
p2 |
spacer |
LSC |
AT |
18 |
30354 |
30371 |
petN-trnC(GCA) |
23 |
p1 |
spacer |
LSC |
G |
12 |
31694 |
31705 |
trnC(GCA)-trnG(GCC) |
24 |
p1 |
spacer |
LSC |
A |
13 |
31775 |
31787 |
trnC(GCA)-trnG(GCC) |
25 |
p1 |
spacer |
LSC |
A |
12 |
32989 |
33000 |
trnS(UGA)-psbC |
26 |
p1 |
spacer |
LSC |
T |
13 |
33060 |
33072 |
trnS(UGA)-psbC |
27 |
p4 |
spacer |
LSC |
ATCT |
16 |
33593 |
33608 |
trnS(UGA)-psbC |
28 |
p4 |
spacer |
LSC |
ATAG |
12 |
33611 |
33622 |
trnS(UGA)-psbC |
29 |
p1 |
spacer |
LSC |
T |
11 |
36719 |
36729 |
psbD-trnT(GGU) |
30 |
p1 |
spacer |
LSC |
A |
10 |
36847 |
36856 |
psbD-trnT(GGU) |
31 |
p1 |
spacer |
LSC |
T |
19 |
37265 |
37283 |
psbD-trnT(GGU) |
32 |
p1 |
spacer |
LSC |
A |
11 |
37663 |
37673 |
psbD-trnT(GGU) |
33 |
p1 |
intron |
LSC |
T |
12 |
44223 |
44234 |
ycf3 |
34 |
p1 |
intron |
LSC |
C |
11 |
45321 |
45331 |
ycf3 |
35 |
p1 |
spacer |
LSC |
T |
15 |
45718 |
45732 |
ycf3-trnS(GGA) |
36 |
p1 |
spacer |
LSC |
A |
10 |
45774 |
45783 |
ycf3-trnS(GGA) |
37 |
p1 |
spacer |
LSC |
T |
12 |
45844 |
45855 |
ycf3-trnS(GGA) |
38 |
p1 |
spacer |
LSC |
T |
11 |
46314 |
46324 |
trnS(GGA)-rps4 |
39 |
p1 |
spacer |
LSC |
G |
10 |
48017 |
48026 |
rps4-trnL(CAA) |
40 |
p1 |
intron |
LSC |
A |
14 |
48335 |
48348 |
trnL(CAA) |
41 |
p1 |
spacer |
LSC |
T |
13 |
48937 |
48949 |
trnL(CAA)-trnF(GAA) |
42 |
p1 |
spacer |
LSC |
T |
10 |
51278 |
51287 |
ndhC-trnV(UAC) |
43 |
p1 |
spacer |
LSC |
A |
11 |
51294 |
51304 |
ndhC-trnV(UAC) |
44 |
p1 |
spacer |
LSC |
A |
10 |
52139 |
52148 |
trnV(UAC)-trnM(CAU) |
45 |
p2 |
spacer |
LSC |
AT |
14 |
52234 |
52247 |
trnV(UAC)-trnM(CAU) |
46 |
p1 |
spacer |
LSC |
T |
13 |
54704 |
54716 |
atpB-rbcL |
47 |
p1 |
spacer |
LSC |
T |
12 |
56549 |
56560 |
rbcL-trnR(UCG) |
48 |
p1 |
spacer |
LSC |
T |
19 |
56970 |
56988 |
trnR(UCG)-accD |
49 |
p4 |
spacer |
LSC |
TATT |
12 |
58017 |
58028 |
accD-psaI |
50 |
p1 |
spacer |
LSC |
A |
10 |
58077 |
58086 |
accD-psaI |
51 |
p1 |
spacer |
LSC |
T |
11 |
58500 |
58510 |
accD-psaI |
52 |
p1 |
spacer |
LSC |
C |
11 |
62525 |
62535 |
petA-psbJ |
53 |
p1 |
spacer |
LSC |
T |
13 |
63154 |
63166 |
petA-psbJ |
54 |
p1 |
spacer |
LSC |
T |
11 |
64718 |
64728 |
psbE-petL |
55 |
p1 |
spacer |
LSC |
T |
10 |
65534 |
65543 |
petG-trnW(CCA) |
56 |
p1 |
spacer |
LSC |
T |
10 |
65933 |
65942 |
trnW(CCA)-trnP(UGG) |
57 |
p1 |
spacer |
LSC |
C |
10 |
66640 |
66649 |
psaJ-rpl33 |
58 |
p1 |
spacer |
LSC |
T |
17 |
67329 |
67345 |
rps18-rpl20 |
59 |
p1 |
spacer |
LSC |
T |
12 |
68303 |
68314 |
rpl20-rps12 |
60 |
p1 |
spacer |
LSC |
T |
11 |
68506 |
68516 |
rpl20-rps12 |
61 |
p1 |
spacer |
LSC |
T |
11 |
68763 |
68773 |
rpl20-rps12 |
62 |
p4 |
spacer |
LSC |
TATC |
12 |
69219 |
69230 |
rps12-clpP |
63 |
p4 |
spacer |
LSC |
GATA |
12 |
69237 |
69248 |
rps12-clpP |
64 |
p1 |
intron |
LSC |
C |
17 |
69754 |
69770 |
clpP |
65 |
p1 |
intron |
LSC |
C |
11 |
70488 |
70498 |
clpP |
66 |
p2 |
intron |
LSC |
AT |
24 |
70624 |
70647 |
clpP |
67 |
p1 |
spacer |
LSC |
A |
11 |
71628 |
71638 |
clpP-psbB |
68 |
p1 |
intron |
LSC |
T |
16 |
74415 |
74430 |
petB |
69 |
p1 |
intron |
LSC |
T |
10 |
76554 |
76563 |
petD |
70 |
p1 |
spacer |
LSC |
T |
13 |
80161 |
80173 |
rps8-rpl14 |
71 |
p2 |
spacer |
LSC |
AT |
18 |
80193 |
80210 |
rps8-rpl14 |
72 |
p1 |
spacer |
LSC |
A |
14 |
80277 |
80290 |
rps8-rpl14 |
73 |
p2 |
spacer |
LSC |
TA |
12 |
80291 |
80302 |
rps8-rpl14 |
74 |
p1 |
spacer |
LSC |
T |
12 |
80311 |
80322 |
rps8-rpl14 |
75 |
p1 |
intron |
LSC |
T |
12 |
81897 |
81908 |
rpl16 |
76 |
p4 |
intron |
LSC |
CCTC |
12 |
82063 |
82074 |
rpl16 |
77 |
p1 |
intron |
LSC |
T |
13 |
82236 |
82248 |
rpl16 |
78 |
p1 |
spacer |
LSC |
T |
10 |
82462 |
82471 |
rpl16-rps3 |
79 |
p1 |
intron |
LSC |
A |
15 |
84665 |
84679 |
rpl2 |
80 |
p1 |
spacer |
LSC |
A |
12 |
85654 |
85665 |
rpl2-rpl23 |
81 |
p1 |
spacer |
LSC |
T |
13 |
85967 |
85979 |
rpl23-trnI(CAU) |
82 |
p1 |
spacer |
LSC |
T |
11 |
86109 |
86119 |
rpl23-trnI(CAU) |
83 |
p2 |
spacer |
IRB |
AT |
12 |
87991 |
88002 |
trnT(UGU) |
84 |
p2 |
spacer |
IRB |
AT |
12 |
88446 |
88457 |
trnT(UGU)-trnR(ACG) |
85 |
p1 |
spacer |
IRB |
T |
13 |
89893 |
89905 |
trnR(ACG)-rrn5 |
86 |
p1 |
spacer |
IRB |
C |
11 |
97421 |
97431 |
rrn16-rps12 |
87 |
p4 |
spacer |
IRB |
TCTT |
12 |
97952 |
97963 |
rrn16-rps12 |
88 |
p1 |
spacer |
IRB |
T |
11 |
99065 |
99075 |
rrn16-rps12 |
89 |
p1 |
spacer |
IRB |
A |
12 |
103023 |
103034 |
trnH(GUG)-ycf2 |
90 |
p4 |
CDS |
IRB |
AGAA |
12 |
108199 |
108210 |
ycf2 |
91 |
p1 |
spacer |
IRB |
A |
23 |
109609 |
109631 |
ycf2-trnN(GUU) |
92 |
p1 |
spacer |
IRB |
G |
15 |
110408 |
110422 |
trnN(GUU)-ndhF |
93 |
p1 |
spacer |
SSC |
T |
10 |
113579 |
113588 |
rpl21-rpl32 |
94 |
p1 |
spacer |
SSC |
A |
13 |
113692 |
113704 |
rpl21-rpl32 |
95 |
p2 |
spacer |
SSC |
AT |
16 |
113704 |
113719 |
rpl21-rpl32 |
96 |
p1 |
spacer |
SSC |
A |
11 |
114057 |
114067 |
rpl32-trnP(GGG) |
97 |
p1 |
spacer |
SSC |
G |
10 |
114311 |
114320 |
rpl32-trnP(GGG) |
98 |
p1 |
spacer |
SSC |
T |
13 |
114378 |
114390 |
rpl32-trnP(GGG) |
99 |
p1 |
spacer |
SSC |
A |
13 |
114717 |
114729 |
trnP(GGG)-trnL(UAG) |
100 |
p1 |
spacer |
SSC |
A |
11 |
114877 |
114887 |
trnL(UAG)-ccsA |
101 |
p1 |
spacer |
SSC |
T |
12 |
114956 |
114967 |
trnL(UAG)-ccsA |
102 |
p1 |
spacer |
SSC |
A |
11 |
118109 |
118119 |
ndhD-psaC |
103 |
p1 |
spacer |
SSC |
T |
12 |
118124 |
118135 |
ndhD-psaC |
104 |
p1 |
spacer |
SSC |
G |
13 |
118671 |
118683 |
psaC-ndhE |
105 |
p2 |
spacer |
SSC |
TA |
14 |
120486 |
120499 |
ndhI-ndhA |
106 |
p1 |
spacer |
SSC |
A |
13 |
120503 |
120515 |
ndhI-ndhA |
107 |
p2 |
spacer |
SSC |
AT |
20 |
120515 |
120534 |
ndhI-ndhA |
108 |
p1 |
spacer |
SSC |
A |
10 |
120579 |
120588 |
ndhI-ndhA |
109 |
p1 |
intron |
SSC |
T |
10 |
121499 |
121508 |
ndhA |
110 |
p1 |
spacer |
SSC |
A |
14 |
124291 |
124304 |
rps15-ycf1 |
111 |
p4 |
CDS |
SSC |
ACCA |
12 |
129075 |
129086 |
ycf1 |
112 |
p1 |
spacer |
SSC |
C |
13 |
129616 |
129628 |
ycf1-chlN |
113 |
p1 |
spacer |
IRA |
C |
15 |
132548 |
132562 |
chlL-trnN(GUU) |
114 |
p1 |
spacer |
IRA |
T |
23 |
133339 |
133361 |
trnN(GUU)-ycf2 |
115 |
p4 |
CDS |
IRA |
TTTC |
12 |
134759 |
134770 |
ycf2 |
116 |
p1 |
spacer |
IRA |
T |
12 |
139936 |
139947 |
ycf2-trnH(GUG) |
117 |
p1 |
spacer |
IRA |
A |
11 |
143895 |
143905 |
rps12-rrn16 |
118 |
p4 |
spacer |
IRA |
AAAG |
12 |
145006 |
145017 |
rps12-rrn16 |
119 |
p1 |
spacer |
IRA |
G |
11 |
145539 |
145549 |
rps12-rrn16 |
120 |
p1 |
spacer |
IRA |
A |
13 |
153065 |
153077 |
rrn5-trnR(ACG) |
121 |
p2 |
spacer |
IRA |
AT |
12 |
154513 |
154524 |
trnR(ACG)-trnT(UGU) |
122 |
p2 |
spacer |
IRA |
AT |
12 |
154968 |
154979 |
trnT(UGU) |