SSR nr. |
SSR type |
Locus |
Region |
SSR motif |
size |
start |
end |
Location |
1 |
p1 |
spacer |
LSC |
G |
13 |
2113 |
2125 |
ndhB-matK |
2 |
p1 |
intron |
LSC |
T |
10 |
5156 |
5165 |
rps16 |
3 |
p1 |
spacer |
LSC |
G |
16 |
7667 |
7682 |
chlB-trnQ(UUG) |
4 |
p2 |
spacer |
LSC |
AT |
14 |
9108 |
9121 |
trnS(GUC)-psaM |
5 |
p1 |
spacer |
LSC |
G |
11 |
9713 |
9723 |
ycf12-trnG(UCC) |
6 |
p4 |
intron |
LSC |
AATT |
12 |
10328 |
10339 |
trnG(UCC) |
7 |
p1 |
spacer |
LSC |
C |
14 |
14948 |
14961 |
atpH-atpI |
8 |
p1 |
spacer |
LSC |
C |
11 |
15898 |
15908 |
atpI-rps2 |
9 |
p1 |
spacer |
LSC |
C |
11 |
27484 |
27494 |
rpoB-trnD(GUC) |
10 |
p4 |
spacer |
LSC |
ATAG |
12 |
28409 |
28420 |
rpoB-trnD(GUC) |
11 |
p1 |
spacer |
LSC |
T |
12 |
29103 |
29114 |
trnE(UUC)-psbM |
12 |
p4 |
spacer |
LSC |
TGAT |
12 |
29197 |
29208 |
trnE(UUC)-psbM |
13 |
p1 |
spacer |
LSC |
G |
13 |
30325 |
30337 |
ycf66 |
14 |
p1 |
spacer |
LSC |
A |
10 |
32400 |
32409 |
trnC(GCA)-trnG(GCC) |
15 |
p1 |
spacer |
LSC |
C |
12 |
32787 |
32798 |
trnG(GCC)-psbZ |
16 |
p4 |
spacer |
LSC |
TATC |
16 |
34223 |
34238 |
trnS(UGA)-psbC |
17 |
p4 |
spacer |
LSC |
ATAG |
12 |
34242 |
34253 |
trnS(UGA)-psbC |
18 |
p1 |
spacer |
LSC |
T |
10 |
37895 |
37904 |
psbD-trnT(GGU) |
19 |
p5 |
intron |
LSC |
TTCTC |
15 |
39317 |
39331 |
rps14 |
20 |
p3 |
intron |
LSC |
AAT |
12 |
44793 |
44819 |
ycf3 |
21 |
p1 |
intron |
LSC |
T |
10 |
44810 |
44819 |
ycf3 |
22 |
p1 |
intron |
LSC |
C |
11 |
45899 |
45909 |
ycf3 |
23 |
p1 |
spacer |
LSC |
T |
10 |
46284 |
46293 |
ycf3-trnS(GGA) |
24 |
p1 |
spacer |
LSC |
T |
10 |
46867 |
46876 |
trnS(GGA)-rps4 |
25 |
p1 |
spacer |
LSC |
G |
12 |
48604 |
48615 |
rps4-trnL(CAA) |
26 |
p1 |
spacer |
LSC |
T |
10 |
57501 |
57510 |
trnR(UCG)-accD |
27 |
p4 |
spacer |
LSC |
TATT |
12 |
58555 |
58566 |
accD-psaI |
28 |
p1 |
spacer |
LSC |
A |
10 |
58615 |
58624 |
accD-psaI |
29 |
p2 |
spacer |
LSC |
AT |
18 |
59022 |
59039 |
accD-psaI |
30 |
p2 |
spacer |
LSC |
TA |
14 |
63376 |
63389 |
petA-psbJ |
31 |
p1 |
spacer |
LSC |
T |
10 |
66579 |
66588 |
trnW(CCA)-trnP(UGG) |
32 |
p1 |
spacer |
LSC |
C |
12 |
67291 |
67302 |
psaJ-rpl33 |
33 |
p1 |
spacer |
LSC |
A |
10 |
68892 |
68901 |
rpl20-rps12 |
34 |
p1 |
spacer |
LSC |
T |
11 |
68960 |
68970 |
rpl20-rps12 |
35 |
p4 |
spacer |
LSC |
GATA |
12 |
69890 |
69901 |
rps12-clpP |
36 |
p1 |
intron |
LSC |
T |
10 |
70443 |
70452 |
clpP |
37 |
p1 |
intron |
LSC |
T |
11 |
71239 |
71249 |
clpP |
38 |
p1 |
intron |
LSC |
T |
11 |
75002 |
75012 |
petB |
39 |
p1 |
spacer |
LSC |
T |
10 |
77981 |
77990 |
petD-rpoA |
40 |
p1 |
spacer |
LSC |
A |
10 |
79921 |
79930 |
rpl36-infA |
41 |
p1 |
spacer |
LSC |
T |
11 |
80751 |
80761 |
rps8-rpl14 |
42 |
p1 |
spacer |
LSC |
A |
10 |
80792 |
80801 |
rps8-rpl14 |
43 |
p2 |
spacer |
LSC |
AT |
16 |
80801 |
80816 |
rps8-rpl14 |
44 |
p1 |
intron |
LSC |
T |
13 |
82378 |
82390 |
rpl16 |
45 |
p1 |
intron |
LSC |
T |
10 |
82733 |
82742 |
rpl16 |
46 |
p2 |
spacer |
IRB |
AT |
12 |
87789 |
87800 |
trnT(UGU) |
47 |
p1 |
spacer |
IRB |
A |
10 |
94889 |
94898 |
trnI(GAU)-rrn16 |
48 |
p1 |
spacer |
IRB |
A |
12 |
104005 |
104016 |
rrn16-rps12 |
49 |
p1 |
spacer |
IRB |
A |
10 |
107991 |
108000 |
trnH(GUG)-ycf2 |
50 |
p1 |
spacer |
IRB |
C |
10 |
115418 |
115427 |
trnN(GUU)-ndhF |
51 |
p1 |
spacer |
SSC |
A |
10 |
117925 |
117934 |
ndhF-rpl21 |
52 |
p2 |
spacer |
SSC |
TA |
22 |
119288 |
119309 |
rpl32-trnP(GGG) |
53 |
p4 |
spacer |
SSC |
AAAT |
12 |
119665 |
119676 |
trnP(GGG)-trnL(UAG) |
54 |
p1 |
spacer |
SSC |
T |
13 |
119901 |
119913 |
trnL(UAG)-ccsA |
55 |
p1 |
spacer |
SSC |
A |
10 |
123033 |
123042 |
ndhD-psaC |
56 |
p4 |
spacer |
SSC |
AATT |
12 |
123041 |
123052 |
ndhD-psaC |
57 |
p1 |
spacer |
SSC |
G |
15 |
123587 |
123601 |
psaC-ndhE |
58 |
p1 |
spacer |
SSC |
T |
10 |
125374 |
125383 |
ndhI-ndhA |
59 |
p2 |
spacer |
SSC |
AT |
14 |
125418 |
125431 |
ndhI-ndhA |
60 |
p2 |
intron |
SSC |
TA |
16 |
126454 |
126469 |
ndhA |
61 |
p1 |
intron |
SSC |
T |
17 |
126960 |
126976 |
ndhA |
62 |
p1 |
spacer |
SSC |
C |
11 |
134606 |
134616 |
ycf1-chlN |
63 |
p1 |
spacer |
IRA |
G |
10 |
137487 |
137496 |
chlL-trnN(GUU) |
64 |
p1 |
spacer |
IRA |
T |
10 |
144914 |
144923 |
ycf2-trnH(GUG) |
65 |
p1 |
spacer |
IRA |
T |
12 |
148898 |
148909 |
rps12-rrn16 |
66 |
p1 |
spacer |
IRA |
T |
10 |
158016 |
158025 |
rrn16-trnI(GAU) |
67 |
p2 |
spacer |
IRA |
AT |
12 |
165114 |
165125 |
trnT(UGU) |