Repeat type |
Characteristics of SSR |
A. denticulata |
A.
podophylla |
A. gigantea |
A. metteniana |
A.
costularis |
A. spinulosa |
S. brunoniana |
S.
lepifera |
Mononucleotide |
No. of SSRs |
40 |
47 |
41 |
40 |
95 |
96 |
77 |
80 |
|
Abundance (No./kb) |
0.26 |
0.28 |
0.25 |
0.25 |
0.61 |
0.61 |
0.49 |
0.49 |
|
Density (bp/kb) |
2.93 |
3.16 |
3.13 |
2.88 |
7.67 |
7.60 |
6.41 |
6.31 |
|
GC |
0.36 |
0.35 |
0.40 |
0.3 |
0.22 |
0.19 |
0.08 |
0.09 |
Dinucleotide |
No. of SSRs |
8 |
9 |
10 |
10 |
14 |
14 |
15 |
11 |
|
Abundance (No./kb) |
0.05 |
0.05 |
0.06 |
0.06 |
0.09 |
0.09 |
0.10 |
0.07 |
|
Density (bp/kb) |
0.69 |
0.83 |
0.94 |
0.92 |
1.35 |
1.35 |
1.40 |
1.04 |
|
GC |
0.06 |
0 |
0.08 |
0.05 |
0 |
0 |
0.23 |
0.12 |
Trinucleotide |
No. of SSRs |
2 |
1 |
2 |
2 |
1 |
1 |
0 |
0 |
|
Abundance (No./kb) |
0.01 |
0.01 |
0.01 |
0.01 |
0.01 |
0.01 |
0 |
0 |
|
Density (bp/kb) |
0.16 |
0.07 |
0.15 |
0.15 |
0.08 |
0.08 |
0 |
0 |
|
GC |
0 |
0 |
0 |
0 |
0.33 |
0.33 |
0 |
0 |
Tetranucleotide |
No. of SSRs |
10 |
9 |
11 |
12 |
11 |
11 |
10 |
11 |
|
Abundance (No./kb) |
0.80 |
0.05 |
0.07 |
0.07 |
0.07 |
0.07 |
0.06 |
0.07 |
|
Density (bp/kb) |
0.14 |
0.67 |
0.84 |
0.92 |
0.87 |
0.87 |
0.82 |
0.84 |
|
GC |
0.18 |
0.14 |
0.18 |
0.16 |
0.29 |
0.29 |
0.3 |
0.23 |
Pentanucleotide |
No. of SSRs |
1 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
|
Abundance (No./kb) |
0.01 |
0.01 |
0 |
0.01 |
0 |
0 |
0 |
0 |
|
Density (bp/kb) |
0.10 |
0.09 |
0 |
0.09 |
0 |
0 |
0 |
0 |
|
GC |
0 |
0.4 |
0 |
0.4 |
0 |
0 |
0 |
0 |