SSR nr. |
SSR type |
Locus |
Region |
SSR motif |
size |
star |
end |
Location |
1 |
p1 |
spacer |
LSC |
A |
13 |
3514 |
3526 |
matK-rps16 |
2 |
p1 |
spacer |
LSC |
T |
10 |
3613 |
3622 |
matK-rps16 |
3 |
p2 |
spacer |
LSC |
TA |
16 |
7615 |
7630 |
psbK-psbI |
4 |
p1 |
spacer |
LSC |
C |
14 |
8229 |
8242 |
trnS(GCU)-psaM |
5 |
p1 |
spacer |
LSC |
A |
22 |
8332 |
8353 |
trnS(GCU)-psaM |
6 |
p1 |
spacer |
LSC |
T |
11 |
8370 |
8380 |
trnS(GCU)-psaM |
7 |
p1 |
intron |
LSC |
A |
10 |
9507 |
9516 |
ycf12 |
8 |
p1 |
intron |
LSC |
T |
12 |
9648 |
9659 |
ycf12 |
9 |
p1 |
spacer |
LSC |
C |
38 |
13308 |
13345 |
atpF-atpH |
10 |
p1 |
spacer |
LSC |
T |
12 |
15193 |
15204 |
atpI-rps2 |
11 |
p1 |
intron |
LSC |
C |
10 |
22421 |
22430 |
rpoC1 |
12 |
p1 |
spacer |
LSC |
A |
12 |
23409 |
23420 |
rpoC1-rpoB |
13 |
p1 |
spacer |
LSC |
T |
14 |
27774 |
27787 |
rpoB-trnD(GUC) |
14 |
p1 |
spacer |
LSC |
A |
14 |
28387 |
28400 |
trnE(UUC)-psbM |
15 |
p1 |
spacer |
LSC |
T |
21 |
28425 |
28445 |
trnE(UUC)-psbM |
16 |
p1 |
spacer |
LSC |
A |
12 |
29887 |
29898 |
ycf66 |
17 |
p1 |
spacer |
LSC |
T |
10 |
30334 |
30343 |
petN-trnC(GCA) |
18 |
p1 |
spacer |
LSC |
A |
15 |
30525 |
30539 |
petN-trnC(GCA) |
19 |
p1 |
spacer |
LSC |
T |
10 |
30938 |
30947 |
trnC(GCA)-trnG(GCC) |
20 |
p1 |
spacer |
LSC |
T |
12 |
32361 |
32372 |
trnG(GCC)-psbZ |
21 |
p1 |
spacer |
LSC |
T |
10 |
33284 |
33293 |
trnS(UGA)-psbC |
22 |
p4 |
spacer |
LSC |
TATC |
16 |
33813 |
33828 |
trnS(UGA)-psbC |
23 |
p4 |
spacer |
LSC |
ATAG |
12 |
33832 |
33843 |
trnS(UGA)-psbC |
24 |
p1 |
spacer |
LSC |
T |
16 |
37027 |
37042 |
psbD-trnT(GGU) |
25 |
p1 |
spacer |
LSC |
A |
13 |
37070 |
37082 |
psbD-trnT(GGU) |
26 |
p1 |
spacer |
LSC |
T |
19 |
37491 |
37509 |
psbD-trnT(GGU) |
27 |
p1 |
spacer |
LSC |
T |
12 |
37753 |
37764 |
psbD-trnT(GGU) |
28 |
p2 |
spacer |
LSC |
TA |
16 |
38517 |
38532 |
trnfM-rps14 |
29 |
p1 |
spacer |
LSC |
T |
10 |
38541 |
38550 |
trnfM-rps14 |
30 |
p1 |
intron |
LSC |
T |
13 |
44335 |
44347 |
ycf3 |
31 |
p1 |
intron |
LSC |
C |
10 |
45444 |
45453 |
ycf3 |
32 |
p1 |
spacer |
LSC |
T |
12 |
45838 |
45849 |
ycf3-trnS(GGA) |
33 |
p1 |
spacer |
LSC |
T |
12 |
46134 |
46145 |
ycf3-trnS(GGA) |
34 |
p1 |
spacer |
LSC |
T |
11 |
46434 |
46444 |
trnS(GGA)-rps4 |
35 |
p1 |
intron |
LSC |
A |
10 |
48446 |
48455 |
trnL(CAA) |
36 |
p2 |
spacer |
LSC |
TA |
14 |
48820 |
48833 |
trnL(CAA)-trnF(GAA) |
37 |
p1 |
spacer |
LSC |
T |
10 |
51310 |
51319 |
ndhC-trnV(UAC) |
38 |
p1 |
spacer |
LSC |
A |
14 |
52158 |
52171 |
trnV(UAC)-trnM(CAU) |
39 |
p1 |
spacer |
LSC |
T |
11 |
54626 |
54636 |
atpB-rbcL |
40 |
p1 |
spacer |
LSC |
T |
13 |
56570 |
56582 |
rbcL-trnR(UCG) |
41 |
p1 |
spacer |
LSC |
T |
13 |
56989 |
57001 |
trnR(UCG)-accD |
42 |
p1 |
spacer |
LSC |
A |
10 |
58098 |
58107 |
accD_psaI |
43 |
p1 |
spacer |
LSC |
T |
12 |
58522 |
58533 |
accD_psaI |
44 |
p1 |
spacer |
LSC |
A |
11 |
59707 |
59717 |
ycf4-cemA |
45 |
p1 |
spacer |
LSC |
A |
10 |
62694 |
62703 |
petA-psbJ |
46 |
p1 |
spacer |
LSC |
T |
14 |
63180 |
63193 |
petA-psbJ |
47 |
p1 |
spacer |
LSC |
T |
10 |
64840 |
64849 |
psbE-petL |
48 |
p1 |
spacer |
LSC |
A |
10 |
65211 |
65220 |
petL-petG |
49 |
p1 |
spacer |
LSC |
C |
12 |
66700 |
66711 |
psaJ-rpl33 |
50 |
p1 |
spacer |
LSC |
A |
12 |
67888 |
67899 |
rpl20-rps12 |
51 |
p1 |
spacer |
LSC |
T |
13 |
68130 |
68142 |
rpl20-rps12 |
52 |
p1 |
spacer |
LSC |
A |
10 |
68290 |
68299 |
rpl20-rps12 |
53 |
p1 |
spacer |
LSC |
T |
11 |
68557 |
68567 |
rpl20-rps12 |
54 |
p4 |
spacer |
LSC |
TTAT |
12 |
69379 |
69390 |
rps12-clpP |
55 |
p1 |
intron |
LSC |
C |
10 |
70697 |
70706 |
clpP |
56 |
p1 |
spacer |
LSC |
A |
13 |
71660 |
71672 |
clpP-psbB |
57 |
p1 |
spacer |
LSC |
T |
10 |
71754 |
71763 |
clpP-psbB |
58 |
p1 |
spacer |
LSC |
A |
13 |
73543 |
73555 |
psbB-psbT |
59 |
p1 |
spacer |
LSC |
A |
10 |
74268 |
74277 |
psbH-petB |
60 |
p1 |
spacer |
LSC |
T |
13 |
77480 |
77492 |
petD-rpoA |
61 |
p2 |
spacer |
LSC |
AT |
20 |
80238 |
80257 |
rps8-rpl14 |
62 |
p2 |
spacer |
LSC |
AT |
16 |
80338 |
80353 |
rps8-rpl14 |
63 |
p1 |
spacer |
LSC |
A |
13 |
81186 |
81198 |
rpl14-rpl16 |
64 |
p1 |
intron |
LSC |
T |
12 |
81919 |
81930 |
rpl16 |
65 |
p1 |
intron |
LSC |
T |
12 |
82262 |
82273 |
rpl16 |
66 |
p1 |
spacer |
LSC |
T |
11 |
82483 |
82493 |
rpl16-rps3 |
67 |
p1 |
intron |
LSC |
T |
15 |
84995 |
85009 |
rpl2 |
68 |
p1 |
spacer |
LSC |
A |
11 |
85683 |
85693 |
rpl2-rpl23 |
69 |
p1 |
spacer |
LSC |
T |
12 |
85991 |
86002 |
rpl23-trnI(CAU) |
70 |
p1 |
spacer |
LSC |
T |
16 |
86136 |
86151 |
rpl23-trnI(CAU) |
71 |
p4 |
gene |
IRB |
CTAC |
12 |
91392 |
91403 |
rrn23 |
72 |
p2 |
intron |
IRB |
AG |
14 |
94391 |
94404 |
trnI(GAU) |
73 |
p4 |
spacer |
IRB |
TCTT |
12 |
97681 |
97692 |
rrn16-rps12 |
74 |
p1 |
spacer |
IRB |
T |
13 |
98774 |
98786 |
rrn16-rps12 |
75 |
p1 |
spacer |
IRB |
A |
12 |
102750 |
102761 |
trnH(GUG)-ycf2 |
76 |
p4 |
CDS |
IRB |
TTTA |
12 |
104706 |
104717 |
ycf2 |
77 |
p4 |
CDS |
IRB |
AGAA |
12 |
107950 |
107961 |
ycf2 |
78 |
p1 |
spacer |
IRB |
A |
15 |
109364 |
109378 |
ycf2-trnN(GUU) |
79 |
p1 |
spacer |
SSC |
T |
13 |
110416 |
110428 |
ycf2-trnN(GUU) |
80 |
p1 |
spacer |
SSC |
A |
11 |
112695 |
112705 |
ndhF-rpl21 |
81 |
p2 |
spacer |
SSC |
AT |
18 |
113419 |
113436 |
rpl21-rpl32 |
82 |
p1 |
spacer |
SSC |
A |
11 |
113761 |
113771 |
rpl32-trnP(GGG) |
83 |
p1 |
spacer |
SSC |
T |
13 |
114080 |
114092 |
rpl32-trnP(GGG) |
84 |
p1 |
spacer |
SSC |
T |
12 |
119615 |
119626 |
trnP(GGG)-trnL(UAG) |
85 |
p1 |
spacer |
SSC |
A |
10 |
119831 |
119840 |
trnL(UAG)-ccsA |
86 |
p2 |
spacer |
SSC |
AT |
16 |
119920 |
119935 |
trnL(UAG)-ccsA |
87 |
p1 |
spacer |
SSC |
A |
11 |
121168 |
121178 |
ccsA-ndhD |
88 |
p1 |
spacer |
SSC |
A |
14 |
121427 |
121440 |
ccsA-ndhD |
89 |
p1 |
spacer |
SSC |
A |
28 |
123088 |
123115 |
ndhD-psaC |
90 |
p2 |
spacer |
SSC |
CT |
12 |
124783 |
124794 |
ndhG-ndhI |
91 |
p2 |
intron |
SSC |
TA |
12 |
126492 |
126503 |
ndhA |
92 |
p1 |
intron |
SSC |
T |
13 |
127011 |
127023 |
ndhA |
93 |
p1 |
spacer |
SSC |
A |
10 |
129309 |
129318 |
rps15-ycf1 |
94 |
p1 |
spacer |
SSC |
A |
10 |
129333 |
129342 |
rps15-ycf1 |
95 |
p1 |
spacer |
IRA |
T |
15 |
139188 |
139202 |
trnN(GUU)-ycf2 |
96 |
p4 |
CDS |
IRA |
TTTC |
12 |
140604 |
140615 |
ycf2 |
97 |
p4 |
CDS |
IRA |
TAAA |
12 |
143849 |
143860 |
ycf2 |
98 |
p1 |
spacer |
IRA |
T |
12 |
145805 |
145816 |
ycf2-trnH(GUG) |
99 |
p1 |
spacer |
IRA |
A |
13 |
149780 |
149792 |
rps12-rrn16 |
100 |
p4 |
spacer |
IRA |
AAAG |
12 |
150873 |
150884 |
rps12-rrn16 |
101 |
p2 |
intron |
IRA |
TC |
14 |
154161 |
154174 |
trnI(GAU) |
102 |
p4 |
gene |
IRA |
AGGT |
12 |
157161 |
157172 |
rrn23 |