SSR nr. |
SSR type |
Locus |
Region |
SSR motif |
size |
star |
end |
Location |
1 |
p1 |
spacer |
LSC |
A |
15 |
3517 |
3531 |
matK-rps16 |
2 |
p1 |
spacer |
LSC |
T |
10 |
3614 |
3623 |
matK-rps16 |
3 |
p1 |
intron |
LSC |
T |
10 |
4364 |
4373 |
rps16 |
4 |
p1 |
intron |
LSC |
A |
11 |
4861 |
4871 |
rps16 |
5 |
p1 |
spacer |
LSC |
G |
10 |
6893 |
6902 |
chlB-trnQ(UUG) |
6 |
p1 |
spacer |
LSC |
A |
12 |
7068 |
7619 |
psbK-psbI |
7 |
p2 |
spacer |
LSC |
TA |
12 |
7621 |
7632 |
psbK-psbI |
8 |
p1 |
spacer |
LSC |
C |
17 |
8230 |
8246 |
trnS(GCU)-psaM |
9 |
p1 |
spacer |
LSC |
A |
11 |
8332 |
8342 |
trnS(GCU)-psaM |
10 |
p1 |
spacer |
LSC |
T |
12 |
8359 |
8370 |
trnS(GCU)-psaM |
11 |
p1 |
intron |
LSC |
T |
12 |
9637 |
9648 |
trnG(UCC) |
12 |
p2 |
intron |
LSC |
TC |
14 |
12639 |
12652 |
atpF |
13 |
p1 |
spacer |
LSC |
C |
16 |
13302 |
13317 |
atpF-atpH |
14 |
p1 |
spacer |
LSC |
T |
13 |
15171 |
15183 |
atpI-rps2 |
15 |
p1 |
spacer |
LSC |
A |
10 |
23386 |
23395 |
rpoC1-rpoB |
16 |
p1 |
spacer |
LSC |
T |
12 |
27644 |
27655 |
rpoB-trnD(GUC) |
17 |
p1 |
spacer |
LSC |
A |
11 |
28256 |
28266 |
trnE(UUC)-psbM |
18 |
p1 |
spacer |
LSC |
T |
22 |
28291 |
28312 |
trnE(UUC)-psbM |
19 |
p1 |
spacer |
LSC |
A |
14 |
29431 |
29444 |
ycf66 |
20 |
p1 |
spacer |
LSC |
G |
14 |
29522 |
29535 |
ycf66 |
21 |
p1 |
spacer |
LSC |
T |
13 |
30206 |
30218 |
petN-trnC(GCA) |
22 |
p1 |
spacer |
LSC |
T |
11 |
30804 |
30814 |
trnC(GCA)-trnG(GCC) |
23 |
p4 |
spacer |
LSC |
TATC |
16 |
33672 |
33687 |
trnS(UGA)-psbC |
24 |
p4 |
spacer |
LSC |
ATAG |
16 |
33691 |
33706 |
trnS(UGA)-psbC |
25 |
p1 |
spacer |
LSC |
T |
11 |
36882 |
36892 |
psbD-trnT(GGU) |
26 |
p1 |
spacer |
LSC |
A |
10 |
36920 |
36929 |
psbD-trnT(GGU) |
27 |
p1 |
spacer |
LSC |
T |
19 |
37334 |
37352 |
psbD-trnT(GGU) |
28 |
p1 |
spacer |
LSC |
T |
21 |
37588 |
37608 |
psbD-trnT(GGU) |
29 |
p4 |
spacer |
LSC |
ATAG |
12 |
38356 |
38367 |
trnfM(CAU)-rps14 |
30 |
p1 |
spacer |
LSC |
T |
10 |
38371 |
38380 |
trnfM(CAU)-rps14 |
31 |
p1 |
intron |
LSC |
T |
21 |
44159 |
44179 |
ycf3 |
32 |
p1 |
spacer |
LSC |
T |
23 |
45660 |
45682 |
ycf3-trnS(GGA) |
33 |
p1 |
spacer |
LSC |
T |
18 |
45968 |
45985 |
ycf3-trnS(GGA) |
34 |
p1 |
spacer |
LSC |
T |
13 |
46269 |
46281 |
trnS(GGA)-rps4 |
35 |
p1 |
intron |
LSC |
A |
11 |
48282 |
48292 |
trnL(CAA) |
36 |
p2 |
spacer |
LSC |
TA |
12 |
48647 |
48658 |
trnL(CAA)-trnF(GAA) |
37 |
p2 |
spacer |
LSC |
TA |
24 |
48661 |
48684 |
trnL(CAA)-trnF(GAA) |
38 |
p1 |
spacer |
LSC |
T |
12 |
51179 |
51190 |
ndhC-trnV(UAC) |
39 |
p1 |
intron |
LSC |
T |
10 |
51514 |
51523 |
trnV(UAC) |
40 |
p1 |
spacer |
LSC |
A |
16 |
52031 |
52046 |
trnV(UAC)-trnM(CAU) |
41 |
p1 |
spacer |
LSC |
T |
10 |
54498 |
54507 |
atpB-rbcL |
42 |
p1 |
spacer |
LSC |
T |
12 |
56441 |
56452 |
rbcL-trnR(UCG) |
43 |
p1 |
spacer |
LSC |
T |
14 |
56859 |
56872 |
trnR(UCG)-accD |
44 |
p1 |
spacer |
LSC |
T |
10 |
58386 |
58395 |
accD-psaI |
45 |
p2 |
spacer |
LSC |
AT |
16 |
62683 |
62698 |
petA-psbJ |
46 |
p1 |
spacer |
LSC |
T |
13 |
63021 |
63033 |
petA-psbJ |
47 |
p1 |
spacer |
LSC |
T |
16 |
64669 |
64684 |
psbE-petL |
48 |
p1 |
spacer |
LSC |
A |
12 |
65041 |
65052 |
petL-petG |
49 |
p1 |
spacer |
LSC |
C |
10 |
66553 |
66562 |
psaJ-rpl33 |
50 |
p1 |
spacer |
LSC |
A |
13 |
67731 |
67743 |
rpl20-rps12 |
51 |
p1 |
spacer |
LSC |
T |
13 |
67974 |
67986 |
rpl20-rps12 |
52 |
p1 |
spacer |
LSC |
A |
15 |
68134 |
68148 |
rpl20-rps12 |
53 |
p1 |
spacer |
LSC |
T |
11 |
68406 |
68416 |
rpl20-rps12 |
54 |
p4 |
spacer |
LSC |
TATC |
12 |
69106 |
69117 |
rps12-clpP |
55 |
p2 |
intron |
LSC |
TA |
12 |
70495 |
70506 |
clpP |
56 |
p1 |
intron |
LSC |
C |
14 |
70536 |
70549 |
clpP |
57 |
p1 |
spacer |
LSC |
A |
12 |
71504 |
71515 |
clpP-psbB |
58 |
p1 |
spacer |
LSC |
T |
11 |
71597 |
71607 |
clpP-psbB |
59 |
p1 |
spacer |
LSC |
A |
18 |
73387 |
73404 |
psbB-psbT |
60 |
p1 |
intron |
LSC |
T |
10 |
74735 |
74744 |
petB |
61 |
p1 |
spacer |
LSC |
T |
10 |
77271 |
77280 |
petD-ropA |
62 |
p1 |
spacer |
LSC |
T |
11 |
77328 |
77338 |
petD-ropA |
63 |
p1 |
spacer |
LSC |
T |
14 |
80050 |
80063 |
rps8-rpl14 |
64 |
p2 |
spacer |
LSC |
AT |
14 |
80083 |
80096 |
rps8-rpl14 |
65 |
p2 |
spacer |
LSC |
AT |
18 |
80177 |
80194 |
rps8-rpl14 |
66 |
p1 |
spacer |
LSC |
A |
13 |
81030 |
81042 |
rpl14-rpl16 |
67 |
p1 |
intron |
LSC |
T |
11 |
81765 |
81775 |
rpl16 |
68 |
p1 |
intron |
LSC |
T |
11 |
82107 |
82117 |
rpl16 |
69 |
p2 |
spacer |
LSC |
AT |
14 |
82324 |
82337 |
rpl16-rps3 |
70 |
p1 |
intron |
LSC |
A |
10 |
84458 |
84467 |
rpl2 |
71 |
p1 |
intron |
LSC |
A |
10 |
84570 |
84549 |
rpl2 |
72 |
p2 |
intron |
LSC |
AT |
12 |
84561 |
84572 |
rpl2 |
73 |
p1 |
intron |
LSC |
T |
14 |
84852 |
84865 |
rpl2 |
74 |
p1 |
spacer |
LSC |
T |
13 |
85845 |
85857 |
rpl23-trnI(CAU) |
75 |
p1 |
spacer |
LSC |
T |
13 |
85991 |
86003 |
rpl23-trnI(CAU) |
76 |
p4 |
gene |
IRA |
CTAC |
12 |
91186 |
91197 |
rrn23 |
77 |
p2 |
intron |
IRA |
AG |
12 |
94186 |
94197 |
trnI(CAU) |
78 |
p4 |
spacer |
IRA |
TCTT |
12 |
97474 |
97485 |
rrn16-rps12 |
79 |
p1 |
spacer |
IRA |
T |
14 |
98567 |
98580 |
rrn16-rps12 |
80 |
p1 |
spacer |
IRA |
A |
12 |
102544 |
102555 |
trnH(GUG)-ycf2 |
81 |
p4 |
CDS |
IRA |
AGAA |
12 |
107744 |
107755 |
ycf2 |
82 |
p1 |
spacer |
IRA |
A |
15 |
109158 |
109172 |
ycf2-trnN(GUU) |
83 |
p1 |
spacer |
SSC |
T |
11 |
110207 |
110217 |
trnN(GUU)-ndhF |
84 |
p1 |
spacer |
SSC |
A |
14 |
113545 |
113558 |
rpl32-trnP(GGG) |
85 |
p1 |
spacer |
SSC |
A |
11 |
113825 |
113835 |
rpl32-trnP(GGG) |
86 |
p1 |
spacer |
SSC |
T |
15 |
113869 |
113883 |
rpl32-trnP(GGG) |
87 |
p1 |
spacer |
SSC |
A |
13 |
114374 |
114386 |
trnL(UAG)-ccsA |
88 |
p2 |
spacer |
SSC |
AT |
20 |
114464 |
114483 |
trnL(UAG)-ccsA |
89 |
p1 |
spacer |
SSC |
A |
13 |
115715 |
115727 |
ccsA-ndhD |
90 |
p1 |
spacer |
SSC |
A |
14 |
115972 |
115985 |
ccsA-ndhD |
91 |
p1 |
spacer |
SSC |
A |
14 |
117633 |
117646 |
ndhD-psaC |
92 |
p2 |
spacer |
SSC |
CT |
12 |
119317 |
119328 |
ndhG-ndhI |
93 |
p2 |
intron |
SSC |
AT |
16 |
121036 |
121051 |
ndhA |
94 |
p1 |
intron |
SSC |
T |
11 |
121544 |
121554 |
ndhA |
95 |
p1 |
intron |
SSC |
A |
11 |
123840 |
123850 |
rps15-ycf1 |
96 |
p1 |
spacer |
IRB |
T |
15 |
133684 |
133698 |
trnN(GUU)-ycf2 |
97 |
p4 |
CDS |
IRB |
TTTC |
12 |
135100 |
135111 |
ycf2 |
98 |
p1 |
spacer |
IRB |
T |
12 |
140301 |
140312 |
ycf2-trnH(GUG) |
99 |
p1 |
spacer |
IRB |
A |
14 |
144276 |
144289 |
rps12-rrn16 |
100 |
p4 |
spacer |
IRB |
AAAG |
12 |
145370 |
145381 |
rps12-rrn16 |
101 |
p2 |
intron |
IRB |
TC |
12 |
148658 |
148669 |
trnI(GUA) |
102 |
p4 |
gene |
IRB |
AGGT |
12 |
151657 |
151668 |
rrn23 |