SSR nr. |
SSR type |
Locus |
Region |
SSR motif |
size |
star |
end |
Location |
1 |
p1 |
intron |
LSC |
T |
11 |
367 |
374 |
ndhB |
2 |
p1 |
spacer |
LSC |
A |
12 |
3443 |
3454 |
matK-rps16 |
3 |
p1 |
spacer |
LSC |
T |
10 |
3538 |
3547 |
matK-rps16 |
4 |
p1 |
intron |
LSC |
T |
11 |
4288 |
4298 |
rps16 |
5 |
p1 |
spacer |
LSC |
G |
15 |
6798 |
6812 |
chlB-trnQ(UUG) |
6 |
p1 |
spacer |
LSC |
A |
11 |
7517 |
7527 |
psbK-psbI |
7 |
p2 |
spacer |
LSC |
TA |
12 |
7529 |
7540 |
psbK-psbI |
8 |
p1 |
spacer |
LSC |
C |
13 |
8126 |
8138 |
trnS(GCU)-psaM |
9 |
p2 |
spacer |
LSC |
AT |
16 |
8229 |
8244 |
trnS(GCU)-psaM |
10 |
p1 |
spacer |
LSC |
T |
10 |
8244 |
8253 |
trnS(GCU)-psaM |
11 |
p1 |
spacer |
LSC |
G |
11 |
8797 |
8807 |
ycf12-trnG(UCC) |
12 |
p1 |
intron |
LSC |
C |
14 |
9681 |
9694 |
trnG(UCC) |
13 |
p1 |
spacer |
LSC |
C |
19 |
14047 |
14065 |
atpH-atpI |
14 |
p1 |
spacer |
LSC |
A |
11 |
14078 |
14088 |
atpH-atpI |
15 |
p1 |
spacer |
LSC |
T |
13 |
15006 |
15018 |
atpI-rps2 |
16 |
p1 |
intron |
LSC |
T |
13 |
22288 |
22300 |
rpoC1 |
17 |
p3 |
intron |
LSC |
AAG |
12 |
22479 |
22490 |
rpoC1 |
18 |
p1 |
spacer |
LSC |
A |
11 |
23235 |
23245 |
rpoC1-rpoB |
19 |
p1 |
spacer |
LSC |
T |
10 |
27599 |
27608 |
rpoB-trnD(GUC) |
20 |
p1 |
spacer |
LSC |
A |
12 |
28205 |
28216 |
trnE(UUC)-psbM |
21 |
p1 |
spacer |
LSC |
A |
12 |
29369 |
29380 |
ycf66 |
22 |
p2 |
spacer |
LSC |
AT |
18 |
30361 |
30378 |
petN-trnC(GCA) |
23 |
p1 |
spacer |
LSC |
G |
12 |
31701 |
31712 |
trnC(GCA)-trnG(GCC) |
24 |
p1 |
spacer |
LSC |
A |
13 |
31782 |
31794 |
trnC(GCA)-trnG(GCC) |
25 |
p1 |
spacer |
LSC |
A |
12 |
32996 |
33007 |
trnS(UGA)-psbC |
26 |
p1 |
spacer |
LSC |
T |
13 |
33067 |
33079 |
trnS(UGA)-psbC |
27 |
p4 |
spacer |
LSC |
ATCT |
16 |
33600 |
33615 |
trnS(UGA)-psbC |
28 |
p4 |
spacer |
LSC |
ATAG |
12 |
33618 |
33629 |
trnS(UGA)-psbC |
29 |
p1 |
spacer |
LSC |
T |
11 |
36726 |
36736 |
psbD-trnT(GGU) |
30 |
p1 |
spacer |
LSC |
A |
10 |
36854 |
36863 |
psbD-trnT(GGU) |
31 |
p1 |
spacer |
LSC |
T |
19 |
37272 |
37290 |
psbD-trnT(GGU) |
32 |
p1 |
spacer |
LSC |
A |
12 |
37670 |
37681 |
psbD-trnT(GGU) |
33 |
p1 |
intron |
LSC |
T |
11 |
44231 |
44241 |
ycf3 |
34 |
p1 |
intron |
LSC |
C |
11 |
45328 |
45338 |
ycf3 |
35 |
p1 |
spacer |
LSC |
T |
15 |
45725 |
45739 |
ycf3-trnS(GGA) |
36 |
p1 |
spacer |
LSC |
A |
10 |
45781 |
45790 |
ycf3-trnS(GGA) |
37 |
p1 |
spacer |
LSC |
T |
12 |
45851 |
45862 |
ycf3-trnS(GGA) |
38 |
p1 |
spacer |
LSC |
T |
11 |
46321 |
46331 |
trnS(GGA)-rps4 |
39 |
p1 |
spacer |
LSC |
G |
10 |
48024 |
48033 |
rps4-trnL(CAA) |
40 |
p1 |
intron |
LSC |
A |
14 |
48342 |
48355 |
trnL(CAA) |
41 |
p1 |
spacer |
LSC |
T |
14 |
48944 |
48957 |
trnL(CAA)-trnF(GAA) |
42 |
p1 |
spacer |
LSC |
T |
10 |
51286 |
51295 |
ndhC-trnV(UAC) |
43 |
p1 |
spacer |
LSC |
A |
11 |
51302 |
51312 |
ndhC-trnV(UAC) |
44 |
p1 |
spacer |
LSC |
A |
10 |
52147 |
52156 |
trnV(UAC)-trnM(CAU) |
45 |
p2 |
spacer |
LSC |
AT |
14 |
52242 |
52255 |
trnV(UAC)-trnM(CAU) |
46 |
p1 |
spacer |
LSC |
T |
13 |
54712 |
54724 |
atpB-rbcL |
47 |
p1 |
spacer |
LSC |
T |
12 |
56557 |
56568 |
rbcL-trnR(UCG) |
48 |
p1 |
spacer |
LSC |
T |
19 |
56978 |
56996 |
trnR(UCG)-accD |
49 |
p4 |
spacer |
LSC |
TATT |
12 |
58025 |
58036 |
accD-psaI |
50 |
p1 |
spacer |
LSC |
A |
10 |
58085 |
58094 |
accD-psaI |
51 |
p1 |
spacer |
LSC |
T |
10 |
58508 |
58517 |
accD-psaI |
52 |
p1 |
spacer |
LSC |
C |
11 |
62532 |
62542 |
petA-psbJ |
53 |
p1 |
spacer |
LSC |
T |
13 |
63161 |
63173 |
petA-psbJ |
54 |
p1 |
spacer |
LSC |
T |
11 |
64725 |
64735 |
psbE-petL |
55 |
p1 |
spacer |
LSC |
T |
10 |
65541 |
65550 |
petG-trnW(CCA) |
56 |
p1 |
spacer |
LSC |
T |
10 |
65940 |
65949 |
trnW(CCA)-trnP(UGG) |
57 |
p1 |
spacer |
LSC |
T |
18 |
67335 |
67352 |
rps18-rpl20 |
58 |
p1 |
spacer |
LSC |
T |
12 |
68310 |
68321 |
rpl20-rps12 |
59 |
p1 |
spacer |
LSC |
T |
11 |
68513 |
68523 |
rpl20-rps12 |
60 |
p1 |
spacer |
LSC |
T |
11 |
68770 |
68780 |
rpl20-rps12 |
61 |
p4 |
spacer |
LSC |
TATC |
12 |
69226 |
69237 |
rps12-clpP |
62 |
p4 |
spacer |
LSC |
GATA |
12 |
69244 |
69255 |
rps12-clpP |
63 |
p1 |
intron |
LSC |
C |
42 |
69761 |
69802 |
clpP |
64 |
p1 |
intron |
LSC |
C |
10 |
70520 |
70529 |
clpP |
65 |
p2 |
intron |
LSC |
AT |
24 |
70655 |
70678 |
clpP |
66 |
p1 |
spacer |
LSC |
A |
11 |
71659 |
71669 |
clpP-psbB |
67 |
p1 |
intron |
LSC |
T |
16 |
74446 |
74461 |
petB |
68 |
p1 |
intron |
LSC |
T |
10 |
76585 |
76594 |
petD |
69 |
p1 |
spacer |
LSC |
T |
13 |
80192 |
80204 |
rps8-rpl14 |
70 |
p2 |
spacer |
LSC |
AT |
18 |
80224 |
80241 |
rps8-rpl14 |
71 |
p1 |
spacer |
LSC |
A |
14 |
80308 |
80321 |
rps8-rpl14 |
72 |
p2 |
spacer |
LSC |
TA |
12 |
80322 |
80333 |
rps8-rpl14 |
73 |
p1 |
spacer |
LSC |
T |
12 |
80342 |
80353 |
rps8-rpl14 |
74 |
p1 |
intron |
LSC |
T |
12 |
81928 |
81939 |
rpl16 |
75 |
p4 |
intron |
LSC |
CCTC |
12 |
82094 |
82105 |
rpl16 |
76 |
p1 |
intron |
LSC |
T |
13 |
82267 |
82279 |
rpl16 |
77 |
p1 |
spacer |
LSC |
T |
10 |
82493 |
82502 |
rpl16-rps3 |
78 |
p1 |
intron |
LSC |
A |
14 |
84696 |
84709 |
rpl2 |
79 |
p1 |
spacer |
LSC |
A |
12 |
85684 |
85695 |
rpl2-rpl23 |
80 |
p1 |
spacer |
LSC |
T |
13 |
85997 |
86009 |
rpl23-trnI(CAU) |
81 |
p1 |
spacer |
LSC |
T |
11 |
86139 |
86149 |
rpl23-trnI(CAU) |
82 |
p2 |
spacer |
IRB |
AT |
12 |
88021 |
88032 |
trnT(UGU) |
83 |
p2 |
spacer |
IRB |
AT |
12 |
88476 |
88487 |
trnT(UGU)-trnR(ACG) |
84 |
p1 |
spacer |
IRB |
T |
13 |
89923 |
89935 |
trnR(ACG)-rrn5 |
85 |
p1 |
spacer |
IRB |
C |
13 |
97451 |
97463 |
rrn16-rps12 |
86 |
p4 |
spacer |
IRB |
TCTT |
12 |
97984 |
97995 |
rrn16-rps12 |
87 |
p1 |
spacer |
IRB |
T |
11 |
99097 |
99107 |
rrn16-rps12 |
88 |
p1 |
spacer |
IRB |
A |
12 |
103055 |
103066 |
trnH(GUG)-ycf2 |
89 |
p4 |
CDS |
IRB |
AGAA |
12 |
108231 |
108242 |
ycf2 |
90 |
p1 |
spacer |
IRB |
A |
17 |
109641 |
109657 |
ycf2-trnN(GUU) |
91 |
p1 |
spacer |
IRB |
G |
17 |
110427 |
110443 |
trnN(GUU)-ndhF |
92 |
p1 |
spacer |
SSC |
T |
10 |
113600 |
113609 |
rpl21-rpl32 |
93 |
p1 |
spacer |
SSC |
A |
13 |
113713 |
113725 |
rpl21-rpl32 |
94 |
p2 |
spacer |
SSC |
AT |
16 |
113725 |
113740 |
rpl21-rpl32 |
95 |
p1 |
spacer |
SSC |
A |
12 |
114078 |
114089 |
rpl32-trnP(GGG) |
96 |
p1 |
spacer |
SSC |
G |
10 |
114333 |
114342 |
rpl32-trnP(GGG) |
97 |
p1 |
spacer |
SSC |
T |
14 |
114400 |
114413 |
rpl32-trnP(GGG) |
98 |
p1 |
spacer |
SSC |
A |
13 |
114740 |
114752 |
trnP(GGG)-trnL(UAG) |
99 |
p1 |
spacer |
SSC |
A |
11 |
114900 |
114910 |
trnL(UAG)-ccsA |
100 |
p1 |
spacer |
SSC |
T |
12 |
114979 |
114990 |
trnL(UAG)-ccsA |
101 |
p1 |
spacer |
SSC |
A |
11 |
118132 |
118142 |
ndhD-psaC |
102 |
p1 |
spacer |
SSC |
T |
12 |
118147 |
118158 |
ndhD-psaC |
103 |
p1 |
spacer |
SSC |
G |
13 |
118694 |
118706 |
psaC-ndhE |
104 |
p2 |
spacer |
SSC |
TA |
14 |
120509 |
120522 |
ndhI-ndhA |
105 |
p1 |
spacer |
SSC |
A |
13 |
120526 |
120538 |
ndhI-ndhA |
106 |
p2 |
spacer |
SSC |
AT |
20 |
120538 |
120557 |
ndhI-ndhA |
107 |
p1 |
spacer |
SSC |
A |
10 |
120602 |
120611 |
ndhI-ndhA |
108 |
p1 |
intron |
SSC |
T |
10 |
121522 |
121531 |
ndhA |
109 |
p1 |
spacer |
SSC |
A |
14 |
124314 |
124327 |
rps15-ycf1 |
110 |
p4 |
CDS |
SSC |
ACCA |
12 |
129098 |
129109 |
ycf1 |
111 |
p1 |
spacer |
SSC |
C |
13 |
129639 |
129651 |
ycf1-chlN |
112 |
p1 |
spacer |
IRA |
C |
17 |
132571 |
132587 |
chlL-trnN(GUU) |
113 |
p1 |
spacer |
IRA |
T |
17 |
133357 |
133373 |
trnN(GUU)-ycf2 |
114 |
p4 |
CDS |
IRA |
TTTC |
12 |
134771 |
134782 |
ycf2 |
115 |
p1 |
spacer |
IRA |
T |
12 |
139948 |
139959 |
ycf2-trnH(GUG) |
116 |
p1 |
spacer |
IRA |
A |
11 |
143907 |
143917 |
rps12-rrn16 |
117 |
p4 |
spacer |
IRA |
AAAG |
12 |
145018 |
145029 |
rps12-rrn16 |
118 |
p1 |
spacer |
IRA |
G |
13 |
145551 |
145563 |
rps12-rrn16 |
119 |
p1 |
spacer |
IRA |
A |
13 |
153079 |
153091 |
rrn5-trnR(ACG) |
120 |
p2 |
spacer |
IRA |
AT |
12 |
154527 |
154538 |
trnR(ACG)-trnT(UGU) |
121 |
p2 |
spacer |
IRA |
AT |
12 |
154982 |
154993 |
trnT(UGU) |