SSR nr. SSR type Locus Region SSR motif size start end Location
1 p1 spacer LSC G 13 2113 2125 ndhB-matK
2 p1 intron LSC T 10 5156 5165 rps16
3 p1 spacer LSC G 16 7667 7682 chlB-trnQ(UUG)
4 p2 spacer LSC AT 14 9108 9121 trnS(GUC)-psaM
5 p1 spacer LSC G 11 9713 9723 ycf12-trnG(UCC)
6 p4 intron LSC AATT 12 10328 10339 trnG(UCC)
7 p1 spacer LSC C 14 14948 14961 atpH-atpI
8 p1 spacer LSC C 11 15898 15908 atpI-rps2
9 p1 spacer LSC C 11 27484 27494 rpoB-trnD(GUC)
10 p4 spacer LSC ATAG 12 28409 28420 rpoB-trnD(GUC)
11 p1 spacer LSC T 12 29103 29114 trnE(UUC)-psbM
12 p4 spacer LSC TGAT 12 29197 29208 trnE(UUC)-psbM
13 p1 spacer LSC G 13 30325 30337 ycf66
14 p1 spacer LSC A 10 32400 32409 trnC(GCA)-trnG(GCC)
15 p1 spacer LSC C 12 32787 32798 trnG(GCC)-psbZ
16 p4 spacer LSC TATC 16 34223 34238 trnS(UGA)-psbC
17 p4 spacer LSC ATAG 12 34242 34253 trnS(UGA)-psbC
18 p1 spacer LSC T 10 37895 37904 psbD-trnT(GGU)
19 p5 intron LSC TTCTC 15 39317 39331 rps14
20 p3 intron LSC AAT 12 44793 44819 ycf3
21 p1 intron LSC T 10 44810 44819 ycf3
22 p1 intron LSC C 11 45899 45909 ycf3
23 p1 spacer LSC T 10 46284 46293 ycf3-trnS(GGA)
24 p1 spacer LSC T 10 46867 46876 trnS(GGA)-rps4
25 p1 spacer LSC G 12 48604 48615 rps4-trnL(CAA)
26 p1 spacer LSC T 10 57501 57510 trnR(UCG)-accD
27 p4 spacer LSC TATT 12 58555 58566 accD-psaI
28 p1 spacer LSC A 10 58615 58624 accD-psaI
29 p2 spacer LSC AT 18 59022 59039 accD-psaI
30 p2 spacer LSC TA 14 63376 63389 petA-psbJ
31 p1 spacer LSC T 10 66579 66588 trnW(CCA)-trnP(UGG)
32 p1 spacer LSC C 12 67291 67302 psaJ-rpl33
33 p1 spacer LSC A 10 68892 68901 rpl20-rps12
34 p1 spacer LSC T 11 68960 68970 rpl20-rps12
35 p4 spacer LSC GATA 12 69890 69901 rps12-clpP
36 p1 intron LSC T 10 70443 70452 clpP
37 p1 intron LSC T 11 71239 71249 clpP
38 p1 intron LSC T 11 75002 75012 petB
39 p1 spacer LSC T 10 77981 77990 petD-rpoA
40 p1 spacer LSC A 10 79921 79930 rpl36-infA
41 p1 spacer LSC T 11 80751 80761 rps8-rpl14
42 p1 spacer LSC A 10 80792 80801 rps8-rpl14
43 p2 spacer LSC AT 16 80801 80816 rps8-rpl14
44 p1 intron LSC T 13 82378 82390 rpl16
45 p1 intron LSC T 10 82733 82742 rpl16
46 p2 spacer IRB AT 12 87789 87800 trnT(UGU)
47 p1 spacer IRB A 10 94889 94898 trnI(GAU)-rrn16
48 p1 spacer IRB A 12 104005 104016 rrn16-rps12
49 p1 spacer IRB A 10 107991 108000 trnH(GUG)-ycf2
50 p1 spacer IRB C 10 115418 115427 trnN(GUU)-ndhF
51 p1 spacer SSC A 10 117925 117934 ndhF-rpl21
52 p2 spacer SSC TA 22 119288 119309 rpl32-trnP(GGG)
53 p4 spacer SSC AAAT 12 119665 119676 trnP(GGG)-trnL(UAG)
54 p1 spacer SSC T 13 119901 119913 trnL(UAG)-ccsA
55 p1 spacer SSC A 10 123033 123042 ndhD-psaC
56 p4 spacer SSC AATT 12 123041 123052 ndhD-psaC
57 p1 spacer SSC G 15 123587 123601 psaC-ndhE
58 p1 spacer SSC T 10 125374 125383 ndhI-ndhA
59 p2 spacer SSC AT 14 125418 125431 ndhI-ndhA
60 p2 intron SSC TA 16 126454 126469 ndhA
61 p1 intron SSC T 17 126960 126976 ndhA
62 p1 spacer SSC C 11 134606 134616 ycf1-chlN
63 p1 spacer IRA G 10 137487 137496 chlL-trnN(GUU)
64 p1 spacer IRA T 10 144914 144923 ycf2-trnH(GUG)
65 p1 spacer IRA T 12 148898 148909 rps12-rrn16
66 p1 spacer IRA T 10 158016 158025 rrn16-trnI(GAU)
67 p2 spacer IRA AT 12 165114 165125 trnT(UGU)