SSR nr. SSR type Locus Region SSR motif size star end Location
1 p1 intron LSC T 11 367 374 ndhB
2 p1 spacer LSC A 12 3443 3454 matK-rps16
3 p1 spacer LSC T 10 3538 3547 matK-rps16
4 p1 intron LSC T 11 4288 4298 rps16
5 p1 spacer LSC G 15 6798 6812 chlB-trnQ(UUG)
6 p1 spacer LSC A 11 7517 7527 psbK-psbI
7 p2 spacer LSC TA 12 7529 7540 psbK-psbI
8 p1 spacer LSC C 13 8126 8138 trnS(GCU)-psaM
9 p2 spacer LSC AT 16 8229 8244 trnS(GCU)-psaM
10 p1 spacer LSC T 10 8244 8253 trnS(GCU)-psaM
11 p1 spacer LSC G 11 8797 8807 ycf12-trnG(UCC)
12 p1 intron LSC C 14 9681 9694 trnG(UCC)
13 p1 spacer LSC C 19 14047 14065 atpH-atpI
14 p1 spacer LSC A 11 14078 14088 atpH-atpI
15 p1 spacer LSC T 13 15006 15018 atpI-rps2
16 p1 intron LSC T 13 22288 22300 rpoC1
17 p3 intron LSC AAG 12 22479 22490 rpoC1
18 p1 spacer LSC A 11 23235 23245 rpoC1-rpoB
19 p1 spacer LSC T 10 27599 27608 rpoB-trnD(GUC)
20 p1 spacer LSC A 12 28205 28216 trnE(UUC)-psbM
21 p1 spacer LSC A 12 29369 29380 ycf66
22 p2 spacer LSC AT 18 30361 30378 petN-trnC(GCA)
23 p1 spacer LSC G 12 31701 31712 trnC(GCA)-trnG(GCC)
24 p1 spacer LSC A 13 31782 31794 trnC(GCA)-trnG(GCC)
25 p1 spacer LSC A 12 32996 33007 trnS(UGA)-psbC
26 p1 spacer LSC T 13 33067 33079 trnS(UGA)-psbC
27 p4 spacer LSC ATCT 16 33600 33615 trnS(UGA)-psbC
28 p4 spacer LSC ATAG 12 33618 33629 trnS(UGA)-psbC
29 p1 spacer LSC T 11 36726 36736 psbD-trnT(GGU)
30 p1 spacer LSC A 10 36854 36863 psbD-trnT(GGU)
31 p1 spacer LSC T 19 37272 37290 psbD-trnT(GGU)
32 p1 spacer LSC A 12 37670 37681 psbD-trnT(GGU)
33 p1 intron LSC T 11 44231 44241 ycf3
34 p1 intron LSC C 11 45328 45338 ycf3
35 p1 spacer LSC T 15 45725 45739 ycf3-trnS(GGA)
36 p1 spacer LSC A 10 45781 45790 ycf3-trnS(GGA)
37 p1 spacer LSC T 12 45851 45862 ycf3-trnS(GGA)
38 p1 spacer LSC T 11 46321 46331 trnS(GGA)-rps4
39 p1 spacer LSC G 10 48024 48033 rps4-trnL(CAA)
40 p1 intron LSC A 14 48342 48355 trnL(CAA)
41 p1 spacer LSC T 14 48944 48957 trnL(CAA)-trnF(GAA)
42 p1 spacer LSC T 10 51286 51295 ndhC-trnV(UAC)
43 p1 spacer LSC A 11 51302 51312 ndhC-trnV(UAC)
44 p1 spacer LSC A 10 52147 52156 trnV(UAC)-trnM(CAU)
45 p2 spacer LSC AT 14 52242 52255 trnV(UAC)-trnM(CAU)
46 p1 spacer LSC T 13 54712 54724 atpB-rbcL
47 p1 spacer LSC T 12 56557 56568 rbcL-trnR(UCG)
48 p1 spacer LSC T 19 56978 56996 trnR(UCG)-accD
49 p4 spacer LSC TATT 12 58025 58036 accD-psaI
50 p1 spacer LSC A 10 58085 58094 accD-psaI
51 p1 spacer LSC T 10 58508 58517 accD-psaI
52 p1 spacer LSC C 11 62532 62542 petA-psbJ
53 p1 spacer LSC T 13 63161 63173 petA-psbJ
54 p1 spacer LSC T 11 64725 64735 psbE-petL
55 p1 spacer LSC T 10 65541 65550 petG-trnW(CCA)
56 p1 spacer LSC T 10 65940 65949 trnW(CCA)-trnP(UGG)
57 p1 spacer LSC T 18 67335 67352 rps18-rpl20
58 p1 spacer LSC T 12 68310 68321 rpl20-rps12
59 p1 spacer LSC T 11 68513 68523 rpl20-rps12
60 p1 spacer LSC T 11 68770 68780 rpl20-rps12
61 p4 spacer LSC TATC 12 69226 69237 rps12-clpP
62 p4 spacer LSC GATA 12 69244 69255 rps12-clpP
63 p1 intron LSC C 42 69761 69802 clpP
64 p1 intron LSC C 10 70520 70529 clpP
65 p2 intron LSC AT 24 70655 70678 clpP
66 p1 spacer LSC A 11 71659 71669 clpP-psbB
67 p1 intron LSC T 16 74446 74461 petB
68 p1 intron LSC T 10 76585 76594 petD
69 p1 spacer LSC T 13 80192 80204 rps8-rpl14
70 p2 spacer LSC AT 18 80224 80241 rps8-rpl14
71 p1 spacer LSC A 14 80308 80321 rps8-rpl14
72 p2 spacer LSC TA 12 80322 80333 rps8-rpl14
73 p1 spacer LSC T 12 80342 80353 rps8-rpl14
74 p1 intron LSC T 12 81928 81939 rpl16
75 p4 intron LSC CCTC 12 82094 82105 rpl16
76 p1 intron LSC T 13 82267 82279 rpl16
77 p1 spacer LSC T 10 82493 82502 rpl16-rps3
78 p1 intron LSC A 14 84696 84709 rpl2
79 p1 spacer LSC A 12 85684 85695 rpl2-rpl23
80 p1 spacer LSC T 13 85997 86009 rpl23-trnI(CAU)
81 p1 spacer LSC T 11 86139 86149 rpl23-trnI(CAU)
82 p2 spacer IRB AT 12 88021 88032 trnT(UGU)
83 p2 spacer IRB AT 12 88476 88487 trnT(UGU)-trnR(ACG)
84 p1 spacer IRB T 13 89923 89935 trnR(ACG)-rrn5
85 p1 spacer IRB C 13 97451 97463 rrn16-rps12
86 p4 spacer IRB TCTT 12 97984 97995 rrn16-rps12
87 p1 spacer IRB T 11 99097 99107 rrn16-rps12
88 p1 spacer IRB A 12 103055 103066 trnH(GUG)-ycf2
89 p4 CDS IRB AGAA 12 108231 108242 ycf2
90 p1 spacer IRB A 17 109641 109657 ycf2-trnN(GUU)
91 p1 spacer IRB G 17 110427 110443 trnN(GUU)-ndhF
92 p1 spacer SSC T 10 113600 113609 rpl21-rpl32
93 p1 spacer SSC A 13 113713 113725 rpl21-rpl32
94 p2 spacer SSC AT 16 113725 113740 rpl21-rpl32
95 p1 spacer SSC A 12 114078 114089 rpl32-trnP(GGG)
96 p1 spacer SSC G 10 114333 114342 rpl32-trnP(GGG)
97 p1 spacer SSC T 14 114400 114413 rpl32-trnP(GGG)
98 p1 spacer SSC A 13 114740 114752 trnP(GGG)-trnL(UAG)
99 p1 spacer SSC A 11 114900 114910 trnL(UAG)-ccsA
100 p1 spacer SSC T 12 114979 114990 trnL(UAG)-ccsA
101 p1 spacer SSC A 11 118132 118142 ndhD-psaC
102 p1 spacer SSC T 12 118147 118158 ndhD-psaC
103 p1 spacer SSC G 13 118694 118706 psaC-ndhE
104 p2 spacer SSC TA 14 120509 120522 ndhI-ndhA
105 p1 spacer SSC A 13 120526 120538 ndhI-ndhA
106 p2 spacer SSC AT 20 120538 120557 ndhI-ndhA
107 p1 spacer SSC A 10 120602 120611 ndhI-ndhA
108 p1 intron SSC T 10 121522 121531 ndhA
109 p1 spacer SSC A 14 124314 124327 rps15-ycf1
110 p4 CDS SSC ACCA 12 129098 129109 ycf1
111 p1 spacer SSC C 13 129639 129651 ycf1-chlN
112 p1 spacer IRA C 17 132571 132587 chlL-trnN(GUU)
113 p1 spacer IRA T 17 133357 133373 trnN(GUU)-ycf2
114 p4 CDS IRA TTTC 12 134771 134782 ycf2
115 p1 spacer IRA T 12 139948 139959 ycf2-trnH(GUG)
116 p1 spacer IRA A 11 143907 143917 rps12-rrn16
117 p4 spacer IRA AAAG 12 145018 145029 rps12-rrn16
118 p1 spacer IRA G 13 145551 145563 rps12-rrn16
119 p1 spacer IRA A 13 153079 153091 rrn5-trnR(ACG)
120 p2 spacer IRA AT 12 154527 154538 trnR(ACG)-trnT(UGU)
121 p2 spacer IRA AT 12 154982 154993 trnT(UGU)