Figure 1. Phylogenetic tree of ND viruses based on nucleotide sequence of full F gene.
Phylogenetic tree was based on maximum likelihood calculations (IQTree software) under the best fit model (model: GTR+F+I+G4) according to the Bayesian Information Criterion (BIC). Numbers at nodes represent measures of robustness based on an ultrafast bootstrap approach implemented in IQTree. The sequences of other reference strains as well as all publicly available Egyptian NDV were obtained from GenBank. Divisions and genotypes are designated according to Dimitrov et al., 2019. Egyptian viruses are colored in red, and black circle is infront of viruses of this study.
Figure 2. Phylogenetic tree of NDV viruses based on whole genome sequences.
Phylogenetic tree was based on maximum likelihood calculations (IQTree software) under the best fit model (model: GTR+F+I+G4) according to the Bayesian Information Criterion (BIC). Numbers at nodes represent measures of robustness based on an ultrafast bootstrap approach implemented in IQTree. The sequences of other reference strains as well as all publicly available Egyptian NDV were obtained from GenBank. Divisions and genotypes are designated according to Dimitrov et al., 2019. Egyptian viruses are colored in red, and black circle is in front of viruses of this study.
Figure S1. Phylogenetic tree of ND viruses based on partial sequence of the F gene (375 bp) spanning the cleavage site.
Phylogenetic tree was based on maximum likelihood calculations (IQTree software) under the best fit model (model: TIM2e+G4) according to the Bayesian Information Criterion (BIC). Numbers at nodes represent measures of robustness based on an ultrafast bootstrap approach implemented in IQTree. The sequences of other reference strains as well as all publicly available Egyptian NDV were obtained from GenBank.