List of Abbreviation
HA - High Altitude
IBD - Inflammatory Bowel Disease
GIB - Gastro Intestinal Bleeding
DNA - Deoxyribonucleic acids
rRNA - Ribosomal RNA
WGS - Whole Genome Sequencing
MIDAS - Metagenomic Intra-Species Diversity Analysis System
METABAT2 - Metagenome binning with abundance and tetranucleotide
frequencies
BMI - Body mass index
PCR - Polymerase Chain Reaction
RNA - Ribonucleic acids
MOCAT2 - Metagenomics Assembly and Gene Prediction Toolkit
RefMG.v1 - Reference marker gene
mOTU.v1 - Metagenomic operational taxonomic units
CSS - Cumulative-sum scaling
SOAP - Short Oligonucleotide Analysis Package
FMAP - Functional Mapping and Analysis Pipeline
OTUs - Operational Taxonomic Units
TSS - Total sum scaling
PcoA - Principal Coordinate Analyses
PERMANOVA - Permutational Multivariate Anova
PCA - Principal Component Analysis
CCA - Canonical Correspondence Analysis
PERMDISP - Permutational Analysis of Multivariate Dispersions
LEfSe - Linear discriminant analysis effect size
FDR - False discovery rate
LDA score - Linear discriminant analysis
CAG - Co-abundance of genes
SNPs - Single-nucleotide polymorphism
FASTA - Fast Alignment
DA - differentially abundant
GDP - Guanosine diphosphate
GMP - Guanosine monophosphate
CVD - Cardiovascular disease
LDL - low-density lipoproteins
HIV - Human immunodeficiency virus
IgA - Immunoglobulin A
UV - Ultra-Violet