Reference
Ashelby, C. W., Page, T. J., De Grave, S., Hughes, J. M., & Johnson, M. L. (2012). Regional scale speciation reveals multiple invasions of freshwater in Palaemoninae (Decapoda).Zoologica Scripta, 41 (3), 293-306. doi:10.1111/j.1463-6409.2012.00535.x
Barrett, R. D. H., & Hebert, P. D. N. (2005). Identifying spiders through DNA barcodes. Canadian Journal of Zoology, 83 (3), 481-491. doi:10.1139/z05-024
Birch, J. L., Walsh, N. G., Cantrill, D. J., Holmes, G. D., & Murphy, D. J. (2017). Testing efficacy of distance and tree-based methods for DNA barcoding of grasses (Poaceae tribe Poeae) in Australia. PLoS One, 12 (10), e0186259. doi:10.1371/journal.pone.0186259
Blaxter, M., Mann, J., Chapman, T., Thomas, F., Whitton, C., Floyd, R., & Abebe, E. (2005). Defining operational taxonomic units using DNA barcode data. Philosophical Transactions of the Royal Society B-Biological Sciences, 360 (1462), 1935-1943. doi:10.1098/rstb.2005.1725
Bohmann, K., Evans, A., Gilbert, M. T. P., Carvalho, G. R., Creer, S., Knapp, M., . . . de Bruyn, M. (2014). Environmental DNA for wildlife biology and biodiversity monitoring.Trends in Ecology & Evolution, 29 (6), 358-367. doi:10.1016/j.tree.2014.04.003
Bracken, H. D., De Grave, S., & Felder, D. L. (2009). Phylogeny of the infraorder Caridea based on mitochondrial and nuclear genes (Crustacea: Decapoda). In J. W. Martin, K. A. Crandall D. L. Felder (Eds) Decapod Crustacean Phylogenetics, 18 , 281-305. doi:10.1201/9781420092592-c14
Burghart, S. E., Van Woudenberg, L., Daniels, C. A., Meyers, S. D., Peebles, E. B., & Breitbart, M. (2014). Disparity between planktonic fish egg and larval communities as indicated by DNA barcoding. Marine Ecology Progress Series, 503 , 195-204. doi:10.3354/meps10752
Cai, Y. (1996). A revision of the genus Neocaridina (Crustacea: Decapoda: Atyidae). Acta Zootaxonomica Sinica, 21 , 129-160.
Carvalho, D. C., Neto, D. A., Brasil, B. S., & Oliveira, D. A. (2011). DNA barcoding unveils a high rate of mislabeling in a commercial freshwater catfish from Brazil.Mitochondrial DNA, 22 Suppl 1 , 97-105. doi:10.3109/19401736.2011.588219
Chan, T. Y., Lei, H. C., Li, C. P., & Chu, K. H. (2010). Phylogenetic analysis using rDNA reveals polyphyly of Oplophoridae (Decapoda : Caridea). Invertebrate Systematics, 24 (2), 172-181. doi:10.1071/Is09049
Chang, C. H., Lin, H. Y., Ren, Q., Lin, Y. S., & Shao, K. T. (2016). DNA barcode identification of fish products in Taiwan: Government-commissioned authentication cases.Food Control, 66 , 38-43. doi:10.1016/j.foodcont.2016.01.034
Chen, R. T., Tsai, C. F., & Tzeng, W. N. (2009). Freshwater Prawns (Macrobrachium Bate, 1868) of Taiwan with Special References to Their Biogeographical Origins and Dispersion Routes. Journal of Crustacean Biology, 29 (2), 232-244. doi:10.1651/08-3072.1
Clare, E. L., Lim, B. K., Engstrom, M. D., Eger, J. L., & Hebert, P. D. N. (2007). DNA barcoding of Neotropical bats: species identification and discovery within Guyana.Molecular Ecology Notes, 7 (2), 184-190. doi:10.1111/j.1471-8286.2006.01657.x
Coleman, C. O. (2015). Taxonomy in Times of the Taxonomic Impediment - Examples from the Community of Experts on Amphipod Crustaceans. Journal of Crustacean Biology, 35 (6), 729-740. doi:10.1163/1937240x-00002381
Collins, R. A., Armstrong, K. F., Holyoake, A. J., & Keeling, S. (2013). Something in the water: biosecurity monitoring of ornamental fish imports using environmental DNA. Biological Invasions, 15 (6), 1209-1215. doi:10.1007/s10530-012-0376-9
Costa, F. O., deWaard, J. R., Boutillier, J., Ratnasingham, S., Dooh, R. T., Hajibabaei, M., & Hebert, P. D. N. (2007). Biological identifications through DNA barcodes: the case of the Crustacea. Canadian Journal of Fisheries and Aquatic Sciences, 64 (2), 272-295. doi:10.1139/F07-008
Davis, K. E., De Grave, S., Delmer, C., & Wills, M. A. (2018). Freshwater transitions and symbioses shaped the evolution and extant diversity of caridean shrimps. Commun Biol, 1 , 16. doi:10.1038/s42003-018-0018-6
De Grave, S., Cai, Y., & Anker, A. (2008). Global diversity of shrimps (Crustacea : Decapoda : Caridea) in freshwater. Hydrobiologia, 595 , 287-293. doi:10.1007/s10750-007-9024-2
De Grave, S., Li, C. P., Tsang, L. M., Chu, K. H., & Chan, T. Y. (2014). Unweaving hippolytoid systematics (Crustacea, Decapoda, Hippolytidae): resurrection of several families.Zoologica Scripta, 43 (5), 496-507. doi:10.1111/zsc.12067
De Grave, S., Smith, K. G., Adeler, N. A., Allen, D. J., Alvarez, F., Anker, A., . . . Wowor, D. (2015). Dead Shrimp Blues: A Global Assessment of Extinction Risk in Freshwater Shrimps (Crustacea: Decapoda: Caridea). PLoS One, 10 (3). doi:10.1371/journal.pone.0120198
De Queiroz, K. (2007). Species concepts and species delimitation. Syst Biol, 56 (6), 879-886. doi:10.1080/10635150701701083
Feng, J., Sun, Y., Cheng, X., & Li, J. (2008). Sequence analysis of mitochondrial COI gene of Macrobrachium nipponense from the five largest freshwater lakes in china.Journal of Fisheries of China (04), 23-31.
Folmer, O., Black, M., Wr, H., Lutz, R. , & Vrijenhoek, R. (1994). Dna primers for amplification of mitochondrial cytochrome c oxidase subunit i from diverse metazoan invertebrates. . . Molecular marine biology and biotechnology, 3 (5), 294-299.
Frantine-Silva, W., Sofia, S. H., Orsi, M. L., & Almeida, F. S. (2015). DNA barcoding of freshwater ichthyoplankton in the Neotropics as a tool for ecological monitoring.Molecular Ecology Resources, 15 (5), 1226-1237. doi:10.1111/1755-0998.12385
Goncalves, P. F. M., Oliveira-Marques, A. R., Matsumoto, T. E., & Miyaki, C. Y. (2015). DNA Barcoding Identifies Illegal Parrot Trade. Journal of Heredity, 106 , 560-564. doi:10.1093/jhered/esv035
Grave, S. D., & Fransen, C. H. J. M. (2011). Carideorum catalogus: the recent species of the dendrobranchiate, stenopodidean, procarididean and caridean shrimps (crustacea: decapoda). Zoologische Mededelingen Lden, 89 , 195-589.
Hebert, P. D., Cywinska, A., Ball, S. L., & deWaard, J. R. (2003). Biological identifications through DNA barcodes. Proc Biol Sci, 270 (1512), 313-321. doi:10.1098/rspb.2002.2218
Hebert, P. D., Ratnasingham, S., & deWaard, J. R. (2003). Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Proc Biol Sci, 270 Suppl 1 , S96-99. doi:10.1098/rsbl.2003.0025
Hebert, P. D. N., & Gregory, T. R. (2005). The promise of DNA barcoding for taxonomy. Systematic Biology, 54 (5), 852-859. doi:10.1080/10635150500354886
Hendrich, L., Moriniere, J., Haszprunar, G., Hebert, P. D. N., Hausmann, A., Kohler, F., & Balke, M. (2015). A comprehensive DNA barcode database for Central European beetles with a focus on Germany: adding more than 3500 identified species to BOLD. Molecular Ecology Resources, 15 (4), 795-818. doi:10.1111/1755-0998.12354
Holthuis, L. B. (1980). FAO Species Catalogue. Vol. 1—Shrimps and Prawns of the World. An Annotated Catalogue of Species of Interest to Fisheries. 125 , 1-217.
Hubert, N., Espiau, B., Meyer, C., & Planes, S. (2015). Identifying the ichthyoplankton of a coral reef using DNA barcodes. Molecular Ecology Resources, 15 (1), 57-67. doi:10.1111/1755-0998.12293
Iyiola, O. A., Nneji, L. M., Mustapha, M. K., Nzeh, C. G., Oladipo, S. O., Nneji, I. C., . . . Adeola, A. C. (2018). DNA barcoding of economically important freshwater fish species from north-central Nigeria uncovers cryptic diversity.Ecol Evol, 8 (14), 6932-6951. doi:10.1002/ece3.4210
Jorger, K. M., & Schrodl, M. (2013). How to describe a cryptic species? Practical challenges of molecular taxonomy. Front Zool, 10 (1), 59. doi:10.1186/1742-9994-10-59
Khaksar, R., Carlson, T., Schaffner, D. W., Ghorashi, M., Best, D., Jandhyala, S., . . . Amini, S. (2015). Unmasking seafood mislabeling in US markets: DNA barcoding as a unique technology for food authentication and quality control. Food Control, 56 , 71-76. doi:10.1016/j.foodcont.2015.03.007
Klotz, W., Miesen, F. W., Hullen, S., & Herder, F. (2013). Two Asian fresh water shrimp species found in a thermally polluted stream system in North Rhine-Westphalia, Germany.Aquatic Invasions, 8 (3), 333-339. doi:10.3391/ai.2013.8.3.09
Kou, Q., Li, X., Chan, T.-Y., Chu, K. H., & Gan, Z. (2013). Molecular phylogeny of the superfamily Palaemonoidea (Crustacea : Decapoda : Caridea) based on mitochondrial and nuclear DNA reveals discrepancies with the current classification.Invertebrate Systematics, 27 (5). doi:10.1071/is13005
Lee, S. J., & Kim, J. K. (2014). Identification of Trichiurus (Pisces: Trichiuridae) Eggs and Larvae from Korea, with a Taxonomic Note. Fisheries and Aquatic Sciences, 17 (1), 137-143. doi:10.5657/FAS.2014.0137
Li, C. P., De Grave, S., Chan, T. Y., Lei, H. C., & Chu, K. H. (2011). Molecular systematics of caridean shrimps based on five nuclear genes: Implications for superfamily classification. Zoologischer Anzeiger, 250 (4), 270-279. doi:10.1016/j.jcz.2011.04.003
Li, X., Liu, R., Liang, X., & Chen, G. (2007). Fauna Sinica, Invertebrata Vol. 44, Crustacea, Decapoda, Palaemonoidea. Beijing (China): Science Press.
Liang, X. (2004). Fauna Sinica. Invertebrata Vol. 36. Crustacea, Decapoda, Atyidae. Beijing (China):Science Press.
Liu, R. (1955). The Economic Shrimps in Northern of China. Beijing (China):Beijing: Science Press.
Luo, A., Ling, C., Ho, S. Y. W., & Zhu, C. D. (2018). Comparison of Methods for Molecular Species Delimitation Across a Range of Speciation Scenarios. Syst Biol, 67 (5), 830-846. doi:10.1093/sysbio/syy011
Macher, J., Macher, T., & Leese, F. (2017). Combining NCBI and BOLD databases for OTU assignment in metabarcoding and metagenomic datasets: The BOLD_NCBI _Merger.Metabarcoding and Metagenomics 1: e22262.doi:10.3897/mbmg.1.22262
Mar, W. I. N., Kang, P.-F., Mao, B. I. N., & Wang, Y.-F. (2018). Morphological and molecular features of some freshwater prawn species under genus Macrobrachium Spence Bate, 1868 (Crustacea: Decapoda: Palaemonidae) from Myanmar. Zootaxa, 4388 (1). doi:10.11646/zootaxa.4388.1.9
Merckelbach, L. M., & Borges, L. M. S. (2020). Make every species count: FastaChar software for rapid determination of molecular diagnostic characters to describe species.Mol Ecol Resour . doi:10.1111/1755-0998.13222
Murphy, N. P., & Austin, C. M. (2003). Molecular Taxonomy and Phylogenetics of Some Species of Australian Palaemonid Shrimps. Journal of Crustacean Biology, 23 (1), 169-177. doi:10.1651/0278-0372(2003)023[0169:Mtapos]2.0.Co;2
Murphy, N. P., & Austin, C. M. (2004). Multiple origins of the endemic Australian Macrobrachium (Decapoda : Palaemonidae) based on 16S rRNA mitochondrial sequences.Australian Journal of Zoology, 52 (5), 549. doi:10.1071/zo03062
Murphy, N. P., & Austin, C. M. (2005). Phylogenetic relationships of the globally distributed freshwater prawn genus Macrobrachium (Crustacea: Decapoda: Palaemonidae): biogeography, taxonomy and the convergent evolution of abbreviated larval development. Zoologica Scripta, 34 (2), 187-197. doi:10.1111/j.1463-6409.2005.00185.x
New, M. B., & Nair, C. M. (2012). Global scale of freshwater prawn farming. Aquaculture Research, 43 (7), 960-969. doi:10.1111/j.1365-2109.2011.03008.x
Pante, E., Schoelinck, C., & Puillandre, N. (2015). From Integrative Taxonomy to Species Description: One Step Beyond. Systematic Biology, 64 (1), 152-160. doi:10.1093/sysbio/syu083
Pereira, G. (1997). A cladistic analysis of the freshwater shrimps of the family Palaemonidae (Crustacea, Decapoda, Caridea). Acta Biologica Venezuelica 17(Suppl.) , 1-69.
Pileggi, L. G., & Mantelatto, F. L. (2010). Molecular phylogeny of the freshwater prawn genus Macrobrachium (Decapoda, Palaemonidae), with emphasis on the relationships among selected American species. Invertebrate Systematics, 24 (2), 194-208. doi:10.1071/Is09043
Pont, D., Rocle, M., Valentini, A., Civade, R., Jean, P., Maire, A., . . . Dejean, T. (2018). Environmental DNA reveals quantitative patterns of fish biodiversity in large rivers despite its downstream transportation. Scientific Reports, 8 . doi: 10.1038/s41598-018-28424-8
Sambrock, J., & Russel, D. (2001). Molecular cloning: a laboratory manual, 3rd ed. . Immunology, 49 (1), 895-909. doi:10.2307/1309366
Schlick-Steiner, B. C., Seifert, B., Stauffer, C., Christian, E., Crozier, R. H., & Steiner, F. M. (2007). Without morphology, cryptic species stay in taxonomic crypsis following discovery. Trends in Ecology & Evolution, 22 (8), 391-392. doi:10.1016/j.tree.2007.05.004
Shen, Y., Guan, L., Wang, D., & Gan, X. (2016). DNA barcoding and evaluation of geneticdiversity in Cyprinidae fish in the midstream of the Yangtze River. Ecol. Evol., 6 (9), 2702-2713. doi:10.1002/ece3.2060
Shih, H. T., & Cai, Y. (2007). Two new species of the land-locked freshwater shrimps genus, Neocaridina Kubo, 1938 (Decapoda : Caridea : Atyidae), from Taiwan, with notes on speciation on the island. Zoological Studies, 46 (6), 680-694.
Short, J. W. (2004). A Revision of Australian River Prawns, Macrobrachium (Crustacea: Decapoda: Palaemonidae). Hydrobiologia, 525 (1-3), 1-100. doi:10.1023/b:hydr.0000038871.50730.95
Stamatakis, A. (2006). RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics, 22 (21), 2688-2690. doi:10.1093/bioinformatics/btl446
Takahara, T., Minamoto, T., & Doi, H. (2013). Using Environmental DNA to Estimate the Distribution of an Invasive Fish Species in Ponds. PLoS One, 8 (2). doi:10.1371/journal.pone.0056584
Tinacci, L., Guidi, A., Toto, A., Guardone, L., Giusti, A., D’Amico, P., & Armani, A. (2018). DNA barcoding for the verification of supplier’s compliance in the seafood chain: How the lab can support companies in ensuring traceability.Ital J Food Saf, 7 (2), 6894. doi:10.4081/ijfs.2018.6894
Walker, T. M., & Poore, G. C. B. (2003). Rediagnosis of Palaemon and differentiation of southern Australian species (Crustacea: Decapoda: Palaemonidae). Memoirs of Museum Victoria 60 , 243-256. doi:10.24199/j.mmv.2003.60.25
Wang, F. (1989). A Preliminary study on shrimp from Henan Province. . Henan Fisheries, 000 (001), 16-18.
Wang, Z., Guo, Y., Chen, R., He, X., Liu, C., & Liu, Y. (2009). COI barcode sequences of teleosts in the South China Sea. Oceanologia et Limnologia Sinica, 40 (005), 308-614.
Wong, E. H. K., & Hanner, R. H. (2008). DNA barcoding detects market substitution in North American seafood. Food Research International, 41 (8), 828-837. doi:10.1016/j.foodres.2008.07.005
Wong, L. L., Peatman, E., Lu, J., Kucuktas, H., He, S., Zhou, C., Na-nakorn, U., Liu, Z. (2011). DNA barcoding of catfish: species authentication and phylogenetic assessment. PLoS One, 6 (3), e17812. doi:10.1371/journal.pone.0017812
Wowor, D., Muthu, V., Meier, R., Balke, M., Cai, Y., & Ng, P. K. (2009). Evolution of life history traits in Asian freshwater prawns of the genus Macrobrachium (Crustacea: Decapoda: Palaemonidae) based on multilocus molecular phylogenetic analysis. Mol Phylogenet Evol, 52 (2), 340-350. doi:10.1016/j.ympev.2009.01.002
Xiong, X., Guardone, L., Giusti, A., Castigliego, L., Gianfaldoni, D., Guidi, A., & Andrea, A. (2016). DNA barcoding reveals chaotic labeling and misrepresentation of cod (鳕, Xue) products sold on the Chinese market. Food Control, 60 , 519-532. doi:10.1016/j.foodcont.2015.08.028
Zhang, J. J., Kapli, P., Pavlidis, P., & Stamatakis, A. (2013). A general species delimitation method with applications to phylogenetic placements. Bioinformatics, 29 (22), 2869-2876. doi:10.1093/bioinformatics/btt499