Supplemental Figure 2: Hierarchical heatmap of significantly
changing diurnal phosphopeptides at the D-L transition.
The hierarchical heatmap was generated using the R package Pheatmap and
Euclidean distance. Standardized relative log2 FC in phosphopeptide
abundance is shown along with the corresponding AGI and phosphopeptide
with phosphorylation site probabilities. GO terms of proteins in the
heatmap clusters are shown on the right together with their predicted
subcellular localization (SUBAcon). The segments of the circles
represent the nucleus (red), cytosol (orange), plastid (green),
mitochondria (blue), plasma membrane (purple) and other (black)
localizations. The numbers below each pie chart represent the unique
protein identifications. The time points of sampling for phosphoprotein
analysis were 30 min before light (BL30), 10 min after light (AL10) and
30 min after light (AL30).