References
Churches (2020, Feb. 18). Tim Churches Health Data Science Blog:
Analysing COVID-19 (2019-nCoV) outbreak data with R - part 1. Retrieved
from
https://timchurches.github.io/blog/posts/2020-02-18-analysing-covid-19-2019-ncov-outbreak-data-with-r-part-1/
Fine, P., Eames, K., Heymann, D., (2011). ”Herd Immunity”: A Rough
Guide. Clinical infectious diseases: an official publication of the
Infectious Diseases Society of America. 52. 911-6. 10.1093/cid/cir007.
Fu-Chang, H., & Fang-Yu, W. (2020). The Estimated Time-Varying
Reproduction Numbers during the Ongoing Epidemic of the Coronavirus
Disease 2019 (COVID-19) in China. medRxiv. 10.1101/2020.04.11.20061838.
Hethcote, H.W. (2009). The basic epidemiology models: models,
expressions for R0, parameter estimation, and applications. In
Mathematical understanding of infectious disease dynamics, Lecture notes
series, Institute for mathematical sciences, National University of
Singapore, vol. 16, chapter 1.
Qun Li., Xuhua Guan., Peng Wu., Xiaoye Wang., Lei Zhou., et al. (2020).
Early Transmission Dynamics in Wuhan, China, of Novel
Coronavirus–Infected Pneumonia. N Eng J Med. 382.
10.1056/NEJMoa2001316.
Thompson, R., Stockwin, J., Van Gaalen, R., Polonsky, J., Kamvar, Z.,
Demarsh, P., Dahlqwist, E., Li, S., Miguel, E., Jombart, T., et al.
(2019). Improved inference of time-varying reproduction numbers during
infectious disease outbreaks. Epidemics 29:100356
WHO. (2020). Coronavirus disease 2019 (COVID-19) situation reports -
160.
https://www.who.int/docs/default-source/coronaviruse/situation-reports/20200628-covid-19-sitrep-160.pdf?sfvrsn=2fe1c658_2
(Accessed 28 June 2020)
Wikipedia. COVID-19 pandemic lockdown in India.
https://en.wikipedia.org/wiki/COVID-19_pandemic_lockdown_in_India
(Accessed 26 June 2020)
Yuan, J., Li, M., Lv, G., & Lu, Z. (2020). Monitoring Transmissibility
and Mortality of COVID-19 in Europe. Infect Dis . 95.
10.1016/j.ijid.2020.03.050.
Zhang, S., Diao, M., Yu, W., Pei, Lei., Lin, Z., & Chen, D. (2020).
Estimation of the reproductive number of Novel Coronavirus (COVID-19)
and the probable outbreak size on the Diamond Princess cruise ship: A
data-driven analysis. Infect Dis . 93. 10.1016/j.ijid.2020.02.033.
Figure 1. SIR model
Figure 2. Show the number of cases observed that match the number of
confirmed cases expected by our model based on data of India from 02
February 2020 to 26 June 2020
Figure 3. Displays the difference between the number of reported cases
and the estimated number as a log-linear plot based on data of India
from 02 February 2020 to 26 June 2020
Figure 4. Displays cases of susceptible, recovered, observed and
infectious fitted to data from India between 02 February 2020 and 26
June 2020